| Gene | Ubap1 |
| Synonyms | NAG20 |
| Description | ubiquitin-associated protein 1 |
| Locus | NM_023305 UCSC: chr4:41296029-41336799(+) OLP: chr4:41296029-41336799(+)
NM_001290454 UCSC: chr4:41296029-41336799(+) OLP: chr4:41296029-41336799(+)
|
| DB links |
Entrez 67123
MGI 2149543
Ensembl ENSMUSG00000028437
Vega OTTMUSG00000006663
|
| Feature | protein-coding |
| GO_BP |
-
 3 Terms
transport (GO:0006810)
protein transport (GO:0015031)
ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (GO:0043162)
|
| GO_MF |
-
1 Terms
|
| GO_CC |
-
4 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2022328
(v2.0) | Ubap1 | NM_001290454,NM_023305 | 67123
| 19.8081 | 11.7947 | 14.8397 | 56.4264 | 30.0893 | 19.443 | 14.9688 | 15.2899 | 32.053 | 21.1574 |
|
| SPR_Histone_Erkek_5KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2022328
(v2.0) | Ubap1 | 67123
| 555/317 | 0.2943 | 332/317 | -0.0493 | 181/317 | 2.7463 | 402/317 | 1.6662 | 26/317 | -1.5145 | 145/317 | -1.7173 |
|
| SPR_Histone_Erkek_2KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2022328
(v2.0) | Ubap1 | 67123
| 275/118 | 0.7031 | 144/118 | 0.1697 | 176/118 | 4.0448 | 388/118 | 3.0218 | 10/118 | -1.4155 | 46/118 | -1.9239 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2022328
(v2.0) | Ubap1 | 67123
| 44.3452 | 115 | 38.56 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2022328
(v2.0) | Ubap1 | 67123
| 12.6356 | 82 | 15.41 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0021692
(v1.0) | 2280 | C0308G07-3 | Mm.29877 | Ubap1 | 67123
| | | | | | | 2.6529 | 2.6345 | 2.2756 | 2.3676 | 2.0078 | 2.2254 | 2.2128 |
0021692
(v1.0) | 3963 | C0908E12-3 | Mm.29877 | Ubap1 | 67123
| U004210 | NAP001111-001 | Ubap;Ubap1; | TC851321,TC814301 | Q9ERV5 | U,F,2 | 3.5455 | 3.4028 | 3.4621 | 3.8429 | 3.7977 | 3.663 | 3.7496 |
0021692
(v1.0) | 5029 | G0119H07-3 | Mm.29877 | Ubap1 | 67123
| U004210 | NAP093196-001 | Ubap;Ubap1; | TC814301 | Q9ERV5 | U,F,2 | 3.7061 | 3.6224 | 3.4182 | 3.507 | 3.6655 | 3.5332 | 3.7477 |
|
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
