DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0001467
Gene6030458C11Rik
Synonyms
Desc.RIKEN cDNA 6030458C11 gene
LocusNM_029998 chr15:12737932-12754412(-)
NM_001166360 chr15:12749659-12754412(-)
DB links


Entrez 77877
MGI 1925127
Ensembl ENSMUSG00000022195
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2001353
(v2.0)
6030458C11RikNM_001166360,NM_02999877877
4.2714142.889970.440617.19877.761369.77687.4719954.87858.20229.62882
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0001467
(v1.0)
6030458C11Rik77877
Minor ZGA0.99644
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2001353
(v2.0)
6030458C11Rik77877
673/4040.2229444/4040.02127/4041.9002285/4040.82421/404-2.1558124/404-2.2894
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2001353
(v2.0)
6030458C11Rik77877
323/1750.3695165/175-0.1999118/1752.948273/1751.95758/175-2.257462/175-2.0698
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2001353
(v2.0)
6030458C11Rik77877
85.984618047.77
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2001353
(v2.0)
6030458C11Rik77877
28.878812024.07
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
44.58248.782112.79285.37375.25275
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
55.977455.250615.01436.696336.34976
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
46.61451.5620953.2223
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
45.500448.292340.6234
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
56.10547.4522
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
46.64161.5406944.5544
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
11.84415.188525.72194
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
6.624156.99657
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
9.649395.42467
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0001467
(v1.0)
6030458C11RikNM_001166360,NM_02999877877
22.078416.8732
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0001467
(v1.0)
2078C0289A11-3Mm.2048616030458C11Rik77877
U036023NAP003178-001TC900663,TC820530Q9CX64U,F,23.73773.59482.98442.99862.60532.84862.8539
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0001467
(v1.0)
1433860_atMm.2073116030458C11RikNM_029998.3,NM_001166360.177877
366.05412.575176.575100.125181.2
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0001467
(v1.0)
A_51_P1325926030458C11RikNM_02999877877
11P1.2610.258P
0001467
(v1.0)
A_52_P3252556030458C11RikNM_02999877877
11P0.5590.142P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0001467
(v1.0)
6030458C11Rik77877
010010