DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0002080

Gene

Actn1

Synonyms

Description

actinin, alpha 1

Locus

NM_134156 UCSC: chr12:81268529-81361358(-) OLP: chr12:81268529-81361358(-)

DB links

Entrez 109711
MGI 2137706
Ensembl ENSMUSG00000015143

Feature

protein-coding

GO_BP

4 Terms

GO_MF

10 Terms

GO_CC

16 Terms

KEGG

8 Terms

see DBTMEE:2001960 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0002080 (v1.0)	Actn1	NM_134156	109711	28.6989	10.3961	4.05814	5.12493	25.1532

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0002080 (v1.0)	Actn1	NM_134156	109711	30.0073	11.0775	11.3424

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0002080 (v1.0)	Actn1	NM_134156	109711	29.2901	10.2917	10.5826

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0002080 (v1.0)	Actn1	NM_134156	109711	30.0247	10.9258	11.6066

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0002080 (v1.0)	Actn1	NM_134156	109711	3.7572	4.94833	6.92432

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0002080 (v1.0)	Actn1	NM_134156	109711	6.71258	0.746114

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0002080 (v1.0)	Actn1	NM_134156	109711	0.651309	1.71084

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0002080 (v1.0)	5615	H3003H10-3	Mm.23961	Actn1	109711	U034122	NAP095535-001	Actn1;	TC925428		U,F,2	2.411	2.6299	2.472	2.4699	2.706	2.5835	2.6924
0002080 (v1.0)	13380	J0032A10-3	Mm.23961	Actn1	109711	U034122	NAP032159-1	Actn1;	TC925428		U,F,2	3.1578	2.9394	3.0813	3.0368	3.4443	3.4546	3.4515

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0002080 (v1.0)	1428585_at	Mm.253564	Actn1	NM_134156.2	109711	466.7	328.85	274.175	459.25	573.1

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0002080 (v1.0)	A_51_P347862	Actn1	NM_134156	109711	1	1	P	0.44	0.0778	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0002080 (v1.0)	Actn1	109711	19	23	10	31	49	13