DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002080
GeneActn1
Synonyms
Desc.actinin, alpha 1
LocusNM_134156 chr12:81268529-81361358(-)
DB links


Entrez 109711
MGI 2137706
Ensembl ENSMUSG00000015143
Featureprotein-coding
GO(BP)
  •   4 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2001960
(v2.0)
Actn1NM_134156109711
30.290427.601914.98445.451787.3731122.469936.60414.25059.9623120.1504
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002080
(v1.0)
Actn1109711
Maternal RNA0.94133
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2001960
(v2.0)
Actn1109711
768/4120.3848480/4120.1039151/4122.1206556/4121.7575414/4122.05371917/4121.6164
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2001960
(v2.0)
Actn1109711
523/2120.7871306/2120.4116142/2122.9527532/2122.6443330/2122.67251401/2122.1197
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2001960
(v2.0)
Actn1109711
63.641516738.11
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2001960
(v2.0)
Actn1109711
9.79861118.83
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002080
(v1.0)
Actn1NM_134156109711
28.698910.39614.058145.1249325.1532
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002080
(v1.0)
Actn1FR085584,NM_134156109711
539.619202.78366.120972.6574182.495
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002080
(v1.0)
Actn1NM_134156109711
30.007311.077511.3424
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002080
(v1.0)
Actn1NM_134156109711
29.290110.291710.5826
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002080
(v1.0)
Actn1FR085584,NM_134156109711
328.225162.766
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002080
(v1.0)
Actn1NM_134156109711
30.024710.925811.6066
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002080
(v1.0)
Actn1NM_134156109711
3.75724.948336.92432
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002080
(v1.0)
Actn1FR085584,NM_134156109711
164.607126.323
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002080
(v1.0)
Actn1NM_134156109711
6.712580.746114
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002080
(v1.0)
Actn1NM_134156109711
0.6513091.71084
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002080
(v1.0)
5615H3003H10-3Mm.23961Actn1109711
U034122NAP095535-001Actn1;TC925428U,F,22.4112.62992.4722.46992.7062.58352.6924
0002080
(v1.0)
13380J0032A10-3Mm.23961Actn1109711
U034122NAP032159-1Actn1;TC925428U,F,23.15782.93943.08133.03683.44433.45463.4515
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002080
(v1.0)
1428585_atMm.253564Actn1NM_134156.2109711
466.7328.85274.175459.25573.1
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002080
(v1.0)
A_51_P347862Actn1NM_134156109711
11P0.440.0778P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0002080
(v1.0)
Actn1109711
192310314913