DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002267
GeneAgfg1
SynonymsHrb
Rip
Desc.ArfGAP with FG repeats 1
LocusNM_010472 chr1:82836058-82892850(+)
DB links


Entrez 15463
MGI 1333754
Ensembl ENSMUSG00000026159
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002148
(v2.0)
Agfg1NM_01047215463
27.123526.843835.192318.60688.539933.205913.928132.829310.934733.7165
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002267
(v1.0)
Agfg115463
Minor ZGA0.93829
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002148
(v2.0)
Agfg115463
712/4270.2243443/427-0.063190/4272.4430/4271.336334/427-1.565266/427-1.2773
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002148
(v2.0)
Agfg115463
372/1390.9026231/1390.613174/1393.8126387/1392.786411/139-1.5188104/139-1.0073
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002148
(v2.0)
Agfg115463
70.885612258.1
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002148
(v2.0)
Agfg115463
16.85186525.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
27.901224.334113.85365.923119.91123
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002267
(v1.0)
Agfg1FR332094,NM_01047215463
106.309103.00358.927321.060144.4518
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
29.17329.9193326.549
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
28.47624.089824.3021
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
281.283381.059
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
29.19029.7834726.6537
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
12.82625.7197.57191
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
16.380224.2315
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002267
(v1.0)
Agfg1NM_01047215463
17.82848.75259
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002267
(v1.0)
Agfg1NM_01047215463
1.641192.33793
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002267
(v1.0)
1519C0222C06-3Hrb15463
Hrb2.02452.36831.88272.13332.36822.36532.53
0002267
(v1.0)
7532H3049E10-3Mm.6461Hrb15463
U000500NAP005039-001Hrb;TC942780,TC888156,TC864817,TC864816O70448U,F,23.1083.15383.16083.20443.43453.40363.57
0002267
(v1.0)
10629H3101D04-3Mm.201001Hrb15463
U000500NAP005039-001Hrb;TC942780,TC888156,TC864816O70448U,F,22.80752.85792.68482.35482.55492.55942.9161
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002267
(v1.0)
1452237_atMm.433409Agfg1NM_010472.215463
128.4591.82584.2250125.975
0002267
(v1.0)
1434840_atMm.433409Agfg1NM_010472.215463
000088.5
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002267
(v1.0)
A_51_P191021HrbNM_01047215463
11P0.5130.134P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0002267
(v1.0)
Agfg115463
220220