DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002430
GeneAlms1
Synonyms
Desc.Alstrom syndrome 1
LocusNM_145223 chr6:85537525-85652745(+)
DB links


Entrez 236266
MGI 1934606
Ensembl ENSMUSG00000063810
Vega OTTMUSG00000024144
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002314
(v2.0)
Alms1NM_145223236266
7.0153714.614912.16718.028310.63544.6503114.13638.8685711.09863.94645
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002430
(v1.0)
Alms1236266
2-Cell Transient0.88525
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002314
(v2.0)
Alms1236266
791/4190.4031565/4190.31441068/4194.91112748/4194.0365182/4190.84841014/4190.6744
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002314
(v2.0)
Alms1236266
437/1590.9414296/1590.7766892/1595.98462049/1594.997267/1590.7951315/1590.3849
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002314
(v2.0)
Alms1236266
50.970811643.94
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002314
(v2.0)
Alms1236266
14.15517618.63
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002430
(v1.0)
Alms1NM_145223236266
15.18888.3989613.42787.365689.78422
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002430
(v1.0)
Alms1NM_145223236266
48.181317.662340.009817.735126.9051
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002430
(v1.0)
Alms1NM_145223236266
15.88132.565599.16345
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002430
(v1.0)
Alms1NM_145223236266
15.50178.314636.56431
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002430
(v1.0)
Alms1NM_145223236266
17.05799.04095
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002430
(v1.0)
Alms1NM_145223236266
15.89062.530457.19951
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002430
(v1.0)
Alms1NM_145223236266
12.43217.111867.6715
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002430
(v1.0)
Alms1NM_145223236266
16.90217.865
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002430
(v1.0)
Alms1NM_145223236266
7.7828111.7257
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002430
(v1.0)
Alms1NM_145223236266
3.318213.70588
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002430
(v1.0)
7728H3053B02-5Alms1236266
U007105NAP095881-001TC927056U,F2.70982.69212.60552.59542.3572.38222.4836
0002430
(v1.0)
13863J0217A04-3Mm.25302Alms1236266
U007105NAP095880-001Alms1;TC927056U,F3.63873.48353.03133.00963.3973.11133.2386
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002430
(v1.0)
1444207_atMm.422971Alms1236266
189.150135.225111.875120.35
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002430
(v1.0)
A_52_P240447Alms1NM_145223236266
11P1.1650.403P
0002430
(v1.0)
A_52_P684798Alms1NM_145223236266
11P1.8860.1P
Proteome N/A