DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002662
GeneApc
SynonymsCC1
Min
Desc.adenomatosis polyposis coli
LocusNM_007462 chr18:34380638-34481844(+)
DB links


Entrez 11789
MGI 88039
Ensembl ENSMUSG00000005871
Vega OTTMUSG00000035932
Featureprotein-coding
GO(BP)
  •   58 Terms
      cytokinesis after mitosis (GO:0000281)
      kidney development (GO:0001822)
      hair follicle development (GO:0001942)
      protein complex assembly (GO:0006461)
      response to DNA damage stimulus (GO:0006974)
      negative regulation of microtubule depolymerization (GO:0007026)
      cell cycle arrest (GO:0007050)
      mitotic metaphase/anaphase transition (GO:0007091)
      mitotic cell cycle spindle assembly checkpoint (GO:0007094)
      establishment or maintenance of cell polarity (GO:0007163)
      pattern specification process (GO:0007389)
      axonogenesis (GO:0007409)
      negative regulation of cell proliferation (GO:0008285)
      axis specification (GO:0009798)
      anterior/posterior pattern specification (GO:0009952)
      dorsal/ventral pattern formation (GO:0009953)
      proximal/distal pattern formation (GO:0009954)
      Wnt receptor signaling pathway (GO:0016055)
      cell migration (GO:0016477)
      stem cell maintenance (GO:0019827)
      negative regulation of Wnt receptor signaling pathway (GO:0030178)
      regulation of cell migration (GO:0030334)
      positive regulation of cell migration (GO:0030335)
      regulation of epithelial cell differentiation (GO:0030856)
      positive regulation of epithelial cell differentiation (GO:0030858)
      positive regulation of microtubule polymerization (GO:0031116)
      cytoplasmic microtubule organization (GO:0031122)
      neuron projection development (GO:0031175)
      positive regulation of pseudopodium assembly (GO:0031274)
      regulation of microtubule-based process (GO:0032886)
      T cell differentiation in thymus (GO:0033077)
      somatic stem cell maintenance (GO:0035019)
      negative regulation of odontogenesis (GO:0042483)
      regulation of apoptotic process (GO:0042981)
      positive regulation of apoptotic process (GO:0043065)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of MAPK cascade (GO:0043409)
      skin development (GO:0043588)
      regulation of cell differentiation (GO:0045595)
      positive regulation of cell differentiation (GO:0045597)
      regulation of osteoblast differentiation (GO:0045667)
      regulation of osteoclast differentiation (GO:0045670)
      positive regulation of protein catabolic process (GO:0045732)
      negative regulation of cyclin-dependent protein kinase activity (GO:0045736)
      positive regulation of cell adhesion (GO:0045785)
      muscle cell homeostasis (GO:0046716)
      thymus development (GO:0048538)
      negative regulation of epithelial cell proliferation (GO:0050680)
      regulation of nitrogen compound metabolic process (GO:0051171)
      chromosome organization (GO:0051276)
      regulation of cell cycle (GO:0051726)
      positive regulation of cell division (GO:0051781)
      regulation of attachment of spindle microtubules to kinetochore (GO:0051988)
      retina development in camera-type eye (GO:0060041)
      canonical Wnt receptor signaling pathway (GO:0060070)
      negative regulation of epithelial cell proliferation involved in prostate gland development (GO:0060770)
      negative regulation of canonical Wnt receptor signaling pathway (GO:0090090)
      regulation of glutamate metabolic process (GO:2000211)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002551
(v2.0)
ApcNM_00746211789
4.2106238.982870.988577.720931.24869.481111.782561.309330.71238.44833
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002662
(v1.0)
Apc11789
Major ZGA0.97704
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002551
(v2.0)
Apc11789
676/4380.113510/4380.1031161/4382.1267358/4381.036128/438-1.8727276/438-1.261
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002551
(v2.0)
Apc11789
328/2070.1506240/2070.0968154/2073.1015332/2071.99977/207-2.664497/207-1.6775
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002551
(v2.0)
Apc11789
78.408716946.4
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002551
(v2.0)
Apc11789
10.91859911.03
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002662
(v1.0)
ApcNM_00746211789
40.516448.778157.799221.59758.25129
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002662
(v1.0)
ApcFR322946,FR324390,FR377165,NM_00746211789
253.113260.233328.703123.43243.9878
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002662
(v1.0)
ApcNM_00746211789
42.36361.5398753.218
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002662
(v1.0)
ApcNM_00746211789
41.35148.288345.2833
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002662
(v1.0)
ApcFR322946,FR324390,FR377165,NM_00746211789
397.098409.046
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002662
(v1.0)
ApcNM_00746211789
42.38821.5187749.6652
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002662
(v1.0)
ApcNM_00746211789
53.51320.853221.2433
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002662
(v1.0)
ApcFR322946,FR324390,FR377165,NM_00746211789
156.907125.252
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002662
(v1.0)
ApcNM_00746211789
90.5124143.192
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002662
(v1.0)
ApcNM_00746211789
7.891128.8843
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002662
(v1.0)
5235L19609.1Apc11789
Apc2.68782.55712.40382.40572.83572.52782.6465
0002662
(v1.0)
9413H3080G10-3Mm.7883Apc11789
U018534NAP120698-001TC898544,TC898543Q61315U,F,23.78113.70293.50323.51013.5593.52643.5571
0002662
(v1.0)
18185L0067E10-3Mm.7883Apc11789
U018534NAP120698-001Apc;TC898542Q61315U,F,23.98163.80493.26423.78842.91553.08813.1867
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002662
(v1.0)
1435543_atMm.384171ApcNM_007462.311789
527.225679.15316.275293.05628.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002662
(v1.0)
A_51_P469822ApcNM_00746211789
11P1.0670.637P
0002662
(v1.0)
A_52_P633752ApcNM_00746211789
11P0.5050.163P
0002662
(v1.0)
A_52_P675171ApcNM_00746211789
1 (0.894 to 1.137)1P1.13 (0.97 to 1.204)0.0107P
Proteome N/A