DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002669
GeneAph1a
Synonyms
Desc.anterior pharynx defective 1a homolog (C. elegans)
LocusNM_146104 chr3:95697919-95702213(+)
NM_146134 chr3:95697978-95701389(+)
DB links


Entrez 226548
MGI 2385110
Ensembl ENSMUSG00000015750
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002559
(v2.0)
Aph1aNM_146104,NM_146134226548
50.735618.914334.0813.961312.512523.819515.424344.040410.328224.2758
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002669
(v1.0)
Aph1a226548
Minor ZGA0.95968
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002559
(v2.0)
Aph1a226548
502/386-0.1334275/386-0.603465/3861.0083233/3860.599840/386-1.1926356/386-0.7137
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002559
(v2.0)
Aph1a226548
229/168-0.0655109/168-0.734642/1681.5344157/1681.221311/168-1.7849106/168-1.2518
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002559
(v2.0)
Aph1a226548
83.861413164.02
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002559
(v2.0)
Aph1a226548
28.4687040.67
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002669
(v1.0)
Aph1aNM_146104,NM_146134226548
32.324839.840117.049113.749816.7952
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002669
(v1.0)
Aph1aFR399386,NM_146104,NM_146134226548
22.054218.636220.552131.34763.60699
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002669
(v1.0)
Aph1aNM_146104,NM_146134226548
33.798629.346543.4664
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002669
(v1.0)
Aph1aNM_146104,NM_146134226548
32.990839.4454.3842
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002669
(v1.0)
Aph1aFR399386,NM_146104,NM_146134226548
25.265557.6127
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002669
(v1.0)
Aph1aNM_146104,NM_146134226548
33.818228.944659.6467
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002669
(v1.0)
Aph1aNM_146104,NM_146134226548
15.784813.27611.252
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002669
(v1.0)
Aph1aFR399386,NM_146104,NM_146134226548
31.006712.4546
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002669
(v1.0)
Aph1aNM_146104,NM_146134226548
5.848551.4978
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002669
(v1.0)
Aph1aNM_146104,NM_146134226548
2.542444.00254
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002669
(v1.0)
5843H3009H07-3Mm.34556MGC7221226548
U003582NAP093312-001MGC7221;TC880327,TC880326,TC880323,TC866139Q91VL5U,F3.97413.71813.00242.983.63373.47473.7726
0002669
(v1.0)
8021H3058E10-3Mm.34556MGC7221226548
U030980NAP098906-001TC9204764.10864.10124.18924.00883.98244.01453.9487
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002669
(v1.0)
1424980_s_atMm.306954Aph1aNM_146104.2,NM_146134.1226548
0088.9080.025
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002669
(v1.0)
A_52_P9716Aph1aNM_146104226548
11P0.4020.13P
Proteome N/A