DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002746
GeneArf1
Synonyms
Desc.ADP-ribosylation factor 1
LocusNM_007476 chr11:59024914-59041769(-)
NM_001130408 chr11:59024914-59041664(-)
DB links


Entrez 11840
MGI 99431
Ensembl ENSMUSG00000048076
Vega OTTMUSG00000006340
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002637
(v2.0)
Arf1NM_001130408,NM_00747611840
278.446394.53801.451108.699156.26325.976289.539871.465135.797355.407
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002746
(v1.0)
Arf111840
Minor ZGA0.9889
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002637
(v2.0)
Arf111840
699/4850.0145374/485-0.4899273/4852.7416627/4851.696640/485-1.5188305/485-1.2643
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002637
(v2.0)
Arf111840
375/2090.3292167/209-0.4374257/2093.8235576/2092.77914/209-3.356153/209-2.545
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002637
(v2.0)
Arf111840
37.187911632.06
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002637
(v2.0)
Arf111840
10.12248412.05
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
410.102555.26280.9213108.28206.165
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
206.981217.40136.466442.157882.4938
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
428.8101.831605.803
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
418.551549.687645.859
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
326.365303.508
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
429.049100.436708.356
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
74.9205104.54993.786
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
41.724136.4593
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
266.58942.646
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002746
(v1.0)
Arf1NM_001130408,NM_00747611840
488.417371.113
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0002746
(v1.0)
9272H3078H10-3Mm.6836Arf111840
U032841NAP095700-001Arf1;TC897035,TC897032,TC897030,TC897023,TC897016P32889U,F,23.65883.81913.27843.06892.75593.16833.1322
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002746
(v1.0)
1420920_a_atMm.371546Arf1NM_001130408.1,NM_007476.311840
819.3751290.3556.1387.251054
0002746
(v1.0)
1426390_a_atMm.371546Arf1NM_001130408.1,NM_007476.311840
3173.1755437.4751953.2252133.73997.175
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002746
(v1.0)
A_51_P260051Arf1NM_00747611840
11P1.0420.75P
0002746
(v1.0)
A_52_P242438Arf1NM_00747611840
11P0.8980.478P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0002746
(v1.0)
Arf111840
795313415