DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0002820
GeneArhgef7
SynonymsbetaPix
betaPix-b
betaPix-c
Cool
cool-1
p85SPR
Pak interacting exchange factor
PIX
Desc.Rho guanine nucleotide exchange factor (GEF7)
LocusNM_001113517 chr8:11728105-11827152(+)
NM_017402 chr8:11758330-11835217(+)
NM_001113518 chr8:11758330-11835217(+)
DB links


Entrez 54126
MGI 1860493
Ensembl ENSMUSG00000031511
Vega OTTMUSG00000021108
Featureprotein-coding
GO(BP)
  •   7 Terms
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Regulation of actin cytoskeleton (mmu04810)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002717
(v2.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
14.246312.127611.2314.780955.783516.901647.1175815.9445.605825.62076
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0002820
(v1.0)
Arhgef754126
Maternal RNA0.97047
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002717
(v2.0)
Arhgef754126
798/5290.0802418/529-0.45539/529-0.1568154/529-0.4466350/5291.45472415/5291.5895
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002717
(v2.0)
Arhgef754126
374/2010.3814157/201-0.469930/2010.8196125/2010.6396167/2011.76951070/2011.8079
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002717
(v2.0)
Arhgef754126
85.533818147.26
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002717
(v2.0)
Arhgef754126
18.35110916.84
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002820
(v1.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
12.61137.806453.522694.033834.90323
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0002820
(v1.0)
Arhgef7FR349269,NM_001113517,NM_001113518,NM_01740254126
225.208117.61223.271839.618846.9216
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0002820
(v1.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
13.18625.210038.517
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0002820
(v1.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
12.87117.7280611.7981
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0002820
(v1.0)
Arhgef7FR349269,NM_001113517,NM_001113518,NM_01740254126
334.627247.41
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0002820
(v1.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
13.19395.1386712.9398
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0002820
(v1.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
3.261463.894833.90115
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0002820
(v1.0)
Arhgef7FR349269,NM_001113517,NM_001113518,NM_01740254126
122.413228.513
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0002820
(v1.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
17.48651.74304
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0002820
(v1.0)
Arhgef7NM_001113517,NM_001113518,NM_01740254126
3.13344.40268
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0002820
(v1.0)
1449066_a_atMm.244068Arhgef7NM_001113517.1,NM_001113518.1,NM_017402.454126
221.175153.0596.6100.52570.875
0002820
(v1.0)
1424482_atMm.244068Arhgef7NM_001113517.1,NM_001113518.1,NM_017402.454126
82.42592.72557.800
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0002820
(v1.0)
A_51_P165210Arhgef7NM_01740254126
11P1.0410.769P
0002820
(v1.0)
A_52_P26357Arhgef7AK12906454126
11P0.4940.0911P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0002820
(v1.0)
Arhgef754126
130130