DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003012
GeneAtg5
SynonymsApg5l
Paddy
Desc.autophagy related 5
LocusNM_053069 chr10:43988164-44084097(+)
DB links


Entrez 11793
MGI 1277186
Ensembl ENSMUSG00000038160
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
      Regulation of autophagy (mmu04140)
      RIG-I-like receptor signaling pathway (mmu04622)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002917
(v2.0)
Atg5NM_05306911793
15.2201165.955239.46946.480227.721816.169211.5021195.58330.37918.3676
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003012
(v1.0)
Atg511793
Minor ZGA0.968
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002917
(v2.0)
Atg511793
717/4250.2412485/4250.0742149/4252.058475/4251.486332/425-1.6432217/425-1.5625
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002917
(v2.0)
Atg511793
377/1980.4144236/1980.1364141/1983.0356449/1982.49759/198-2.279781/198-1.8694
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002917
(v2.0)
Atg511793
53.06312642.11
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002917
(v2.0)
Atg511793
10.6647514.22
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003012
(v1.0)
Atg5NM_05306911793
172.492166.31734.623419.258.1991
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003012
(v1.0)
Atg5NM_05306911793
245.142216.98942.469723.565510.4155
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003012
(v1.0)
Atg5NM_05306911793
180.3565.56614181.456
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003012
(v1.0)
Atg5NM_05306911793
176.045164.647144.731
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003012
(v1.0)
Atg5NM_05306911793
220.458716.418
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003012
(v1.0)
Atg5NM_05306911793
180.4615.4899158.736
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003012
(v1.0)
Atg5NM_05306911793
32.055918.586621.1064
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003012
(v1.0)
Atg5NM_05306911793
23.310826.6026
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003012
(v1.0)
Atg5NM_05306911793
22.879811.3659
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003012
(v1.0)
Atg5NM_05306911793
90.351590.4482
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003012
(v1.0)
7669H3052C04-3Mm.22264Apg5l11793
U011479NAP004235-001Apg5l;TC892989Q99J83U,F,23.07463.04462.79662.70782.43062.58792.5672
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003012
(v1.0)
1415684_atMm.22264Atg5NM_053069.511793
682.975618.45484.1582.525101.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003012
(v1.0)
A_52_P254981Atg5lNM_05306911793
11P0.5030.092P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003012
(v1.0)
Atg511793
555756