DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003085
GeneAtp6v0d1
SynonymsAc39
Atp6d
lysosomal 38kDa
P39
Vma6
Desc.ATPase, H+ transporting, lysosomal V0 subunit D1
LocusNM_013477 chr8:108048370-108089940(-)
DB links


Entrez 11972
MGI 1201778
Ensembl ENSMUSG00000013160
Vega OTTMUSG00000032456
Featureprotein-coding
GO(BP)
GO(MF)
  •   3 Terms
      hydrogen-exporting ATPase activity, phosphorylative mechanism (GO:0008553)
      hydrogen ion transmembrane transporter activity (GO:0015078)
      protein complex binding (GO:0032403)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002990
(v2.0)
Atp6v0d1NM_01347711972
132.6478.088179.74984.0595132.65259.137637.92186.2292108.65563.8324
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003085
(v1.0)
Atp6v0d111972
MGA0.9411
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002990
(v2.0)
Atp6v0d111972
637/4340.0407409/434-0.2013221/4342.5941529/4341.611242/434-1.2913299/434-1.1329
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002990
(v2.0)
Atp6v0d111972
334/2010.2188161/201-0.4338213/2013.6069512/2012.665110/201-2.1634102/201-1.5639
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002990
(v2.0)
Atp6v0d111972
52.110413339.18
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002990
(v2.0)
Atp6v0d111972
18.70969619.49
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
81.184855.15862.557592.095726.7374
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
129.82378.093989.5826126.3638.6726
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
84.886248.507960.1786
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
82.857354.604163.9043
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
103.457137.287
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
84.935547.843570.0881
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
57.918588.922175.2591
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
127.22113
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003085
(v1.0)
Atp6v0d1NM_01347711972
28.173582.6296
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003085
(v1.0)
Atp6v0d1NM_01347711972
34.342417.9871
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003085
(v1.0)
17658L0004G06-3Mm.1081Atp6v0d111972
U030177NAP008738-001Atp6v0d1;TC853202P51863U,F,22.74372.94192.83932.76642.71762.83752.8333
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003085
(v1.0)
1415671_atMm.17708Atp6v0d1NM_013477.311972
335.225305.075391.65342.975493.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003085
(v1.0)
A_51_P361201Atp6v0d1NM_01347711972
11P0.7380.211P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003085
(v1.0)
Atp6v0d111972
3333410