DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003128
GeneAtxn3
Synonymsataxin-3
Atx3
Mjd
MJD1
Sca3
Desc.ataxin 3
LocusNM_029705 chr12:103157111-103196453(-)
NM_001167914 chr12:103171134-103196453(-)
DB links


Entrez 110616
MGI 1099442
Ensembl ENSMUSG00000021189
Vega OTTMUSG00000030696
Featureprotein-coding
GO(BP)
  •   14 Terms
      microtubule cytoskeleton organization (GO:0000226)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      proteolysis (GO:0006508)
      ubiquitin-dependent protein catabolic process (GO:0006511)
      misfolded or incompletely synthesized protein catabolic process (GO:0006515)
      regulation of cell-substrate adhesion (GO:0010810)
      actin cytoskeleton organization (GO:0030036)
      cellular response to heat (GO:0034605)
      monoubiquitinated protein deubiquitination (GO:0035520)
      exploration behavior (GO:0035640)
      proteasomal ubiquitin-dependent protein catabolic process (GO:0043161)
      intermediate filament cytoskeleton organization (GO:0045104)
      cellular response to misfolded protein (GO:0071218)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Protein processing in endoplasmic reticulum (mmu04141)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003032
(v2.0)
Atxn3NM_001167914,NM_029705110616
37.51346.8699416.96151.400259.957411.93695.5144717.411560.97319.56617
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003128
(v1.0)
Atxn3110616
MGA0.91886
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003032
(v2.0)
Atxn3110616
698/3500.4819498/3500.39161017/3505.09223249/3504.53627/350-1.6031230/350-1.1997
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003032
(v2.0)
Atxn3110616
369/1450.8304263/1450.7388810/1455.96882203/1455.23258/145-1.99372/145-1.5892
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003032
(v2.0)
Atxn3110616
37.582811034.17
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003032
(v2.0)
Atxn3110616
11.30958014.14
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
7.1276211.714638.216841.54723.96279
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
45.280866.8944189.284239.68122.6069
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
7.4525813.719212.7809
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
7.2744611.59712.8702
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
99.8829174.65
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
7.4569113.531314.1156
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
35.382840.115542.3953
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
138.378170.842
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
3.7803315.272
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003128
(v1.0)
Atxn3NM_001167914,NM_029705110616
1.037711.66543
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003128
(v1.0)
1434408_atMm.485508Atxn3NM_029705.3,NM_001167914.1110616
086.878.975185.625177.55
0003128
(v1.0)
1440855_atMm.485508Atxn3NM_029705.3,NM_001167914.1110616
00737.825761.6250
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003128
(v1.0)
A_52_P308681MjdNM_029705110616
11P1.1740.416P
Proteome N/A