DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003394
GeneBax
SynonymsNkx3-1
bagpipe
Nkx-3.1
NKX3.1
NKX3A
Desc.NK-3 transcription factor, locus 1 (Drosophila)
LocusNM_007527 chr7:52717065-52722268(-)
DB links


Entrez 12028
MGI 99702
Ensembl ENSMUSG00000003873
Featureprotein-coding
GO(BP)
  •   96 Terms
      response to acid (GO:0001101)
      ovarian follicle development (GO:0001541)
      neuron migration (GO:0001764)
      leukocyte homeostasis (GO:0001776)
      T cell homeostatic proliferation (GO:0001777)
      B cell homeostasis (GO:0001782)
      B cell apoptotic process (GO:0001783)
      kidney development (GO:0001822)
      release of cytochrome c from mitochondria (GO:0001836)
      protein insertion into mitochondrial membrane involved in apoptotic signaling pathway (GO:0001844)
      blood vessel remodeling (GO:0001974)
      myeloid cell homeostasis (GO:0002262)
      B cell negative selection (GO:0002352)
      B cell homeostatic proliferation (GO:0002358)
      positive regulation of B cell apoptotic process (GO:0002904)
      apoptotic DNA fragmentation (GO:0006309)
      glycosphingolipid metabolic process (GO:0006687)
      regulation of nitrogen utilization (GO:0006808)
      apoptotic process (GO:0006915)
      induction of apoptosis (GO:0006917)
      activation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0006919)
      cleavage of lamin involved in execution phase of apoptosis (GO:0006922)
      transformed cell apoptotic process (GO:0006927)
      response to DNA damage stimulus (GO:0006974)
      inner mitochondrial membrane organization (GO:0007007)
      outer mitochondrial membrane organization (GO:0007008)
      germ cell development (GO:0007281)
      spermatogenesis (GO:0007283)
      nervous system development (GO:0007399)
      sex differentiation (GO:0007548)
      mitochondrial fusion (GO:0008053)
      cell proliferation (GO:0008283)
      negative regulation of cell proliferation (GO:0008285)
      male gonad development (GO:0008584)
      activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c (GO:0008635)
      apoptotic mitochondrial changes (GO:0008637)
      fertilization (GO:0009566)
      response to wounding (GO:0009611)
      response to toxin (GO:0009636)
      response to salt stress (GO:0009651)
      post-embryonic development (GO:0009791)
      response to ionizing radiation (GO:0010212)
      establishment or maintenance of transmembrane electrochemical gradient (GO:0010248)
      response to gamma radiation (GO:0010332)
      positive regulation of calcium ion transport into cytosol (GO:0010524)
      hypothalamus development (GO:0021854)
      cerebral cortex development (GO:0021987)
      nuclear fragmentation involved in apoptotic nuclear change (GO:0030264)
      negative regulation of protein binding (GO:0032091)
      positive regulation of protein oligomerization (GO:0032461)
      reduction of endoplasmic reticulum calcium ion concentration (GO:0032471)
      release of matrix enzymes from mitochondria (GO:0032976)
      negative regulation of peptidyl-serine phosphorylation (GO:0033137)
      regulation of mammary gland epithelial cell proliferation (GO:0033599)
      cellular response to UV (GO:0034644)
      limb morphogenesis (GO:0035108)
      germ cell programmed cell death (GO:0035234)
      odontogenesis of dentin-containing tooth (GO:0042475)
      regulation of apoptotic process (GO:0042981)
      positive regulation of apoptotic process (GO:0043065)
      regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043281)
      regulation of protein homodimerization activity (GO:0043496)
      regulation of protein heterodimerization activity (GO:0043497)
      regulation of neuron apoptotic process (GO:0043523)
      negative regulation of neuron apoptotic process (GO:0043524)
      positive regulation of neuron apoptotic process (GO:0043525)
      mitochondrial fragmentation involved in apoptotic process (GO:0043653)
      development of secondary sexual characteristics (GO:0045136)
      cellular respiration (GO:0045333)
      retinal cell programmed cell death (GO:0046666)
      induction of retinal programmed cell death (GO:0046674)
      regulation of mitochondrial membrane permeability (GO:0046902)
      positive regulation of developmental pigmentation (GO:0048087)
      negative regulation of fibroblast proliferation (GO:0048147)
      spermatid differentiation (GO:0048515)
      post-embryonic camera-type eye morphogenesis (GO:0048597)
      response to axon injury (GO:0048678)
      homeostasis of number of cells (GO:0048872)
      homeostasis of number of cells within a tissue (GO:0048873)
      protein oligomerization (GO:0051259)
      protein homooligomerization (GO:0051260)
      positive regulation of release of sequestered calcium ion into cytosol (GO:0051281)
      neuron apoptotic process (GO:0051402)
      regulation of cell cycle (GO:0051726)
      regulation of mitochondrial membrane potential (GO:0051881)
      Sertoli cell proliferation (GO:0060011)
      retina development in camera-type eye (GO:0060041)
      positive regulation of apoptotic process involved in mammary gland involution (GO:0060058)
      vagina development (GO:0060068)
      intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (GO:0070059)
      cellular response to organic substance (GO:0071310)
      positive regulation of release of cytochrome c from mitochondria (GO:0090200)
      apoptotic signaling pathway (GO:0097190)
      intrinsic apoptotic signaling pathway (GO:0097193)
      positive regulation of endoplasmic reticulum unfolded protein response (GO:1900103)
      positive regulation of intrinsic apoptotic signaling pathway (GO:2001244)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003273
(v2.0)
BaxNM_00752712028
86.95488.6524213.582516.754128.8962126.56419.0515.857543.8918164.422
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003394
(v1.0)
Bax12028
MGA0.94395
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003273
(v2.0)
Bax12028
670/4280.1334363/428-0.352958/4280.7019130/428-0.385229/428-1.7908242/428-1.4163
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003273
(v2.0)
Bax12028
342/1970.2817180/197-0.24548/1971.5075109/1970.472314/197-1.6875104/197-1.5074
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003273
(v2.0)
Bax12028
77.708813358.43
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003273
(v2.0)
Bax12028
29.11977538.83
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003394
(v1.0)
BaxNM_00752712028
8.997819.4922112.480620.168813.675
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003394
(v1.0)
BaxNM_00752712028
21.793247.531529.193757.280133.7744
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003394
(v1.0)
BaxNM_00752712028
9.4080331.800210.3562
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003394
(v1.0)
BaxNM_00752712028
9.183179.396911.7559
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003394
(v1.0)
BaxNM_00752712028
68.026852.1378
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003394
(v1.0)
BaxNM_00752712028
9.413531.364712.8935
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003394
(v1.0)
BaxNM_00752712028
11.555119.473830.3747
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003394
(v1.0)
BaxNM_00752712028
54.044470.7993
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003394
(v1.0)
BaxNM_00752712028
1.347397.54696
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003394
(v1.0)
BaxNM_00752712028
0.9423790.567282
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003394
(v1.0)
5356NM_007527.1Mm.19904Bax12028
U028529NAP099338-001Bax;TC809898,TC809896Q078132.613.02822.89442.75092.45932.71072.5946
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003394
(v1.0)
1416837_atMm.19904BaxNM_007527.312028
79.22575.02581.1173.625211.525
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003394
(v1.0)
A_51_P254541BaxNM_00752712028
1 (0.898 to 1.121)1P0.947 (0.868 to 1.179)0.473P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003394
(v1.0)
Bax12028
110210