DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003406
GeneBbs4
SynonymsD9Ertd464e
Desc.Bardet-Biedl syndrome 4 (human)
LocusNM_175325 chr9:59169773-59201315(-)
DB links


Entrez 102774
MGI 2143311
Ensembl ENSMUSG00000025235
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003285
(v2.0)
Bbs4NM_175325102774
2.34487167.817137.36116.319712.29949.309832.04701176.18816.43899.20133
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003406
(v1.0)
Bbs4102774
Maternal RNA0.99471
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003285
(v2.0)
Bbs4102774
545/404-0.0807416/404-0.073890/4041.408169/4040.073570/404-0.4655457/404-0.4203
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003285
(v2.0)
Bbs4102774
272/1820.0665199/1820.012675/1822.2481153/1821.070523/182-0.8977142/182-0.95
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003285
(v2.0)
Bbs4102774
41.80968549.19
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003285
(v2.0)
Bbs4102774
15.96295827.52
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003406
(v1.0)
Bbs4NM_175325102774
174.43795.040112.14788.523761.43841
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003406
(v1.0)
Bbs4FR277709,NM_175325102774
542.034282.56735.507829.72633.35564
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003406
(v1.0)
Bbs4NM_175325102774
182.390.857543103.691
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003406
(v1.0)
Bbs4NM_175325102774
178.03194.0858130.489
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003406
(v1.0)
Bbs4FR277709,NM_175325102774
290.638505.519
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003406
(v1.0)
Bbs4NM_175325102774
182.4960.845798143.116
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003406
(v1.0)
Bbs4NM_175325102774
11.2478.2300311.4186
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003406
(v1.0)
Bbs4FR277709,NM_175325102774
16.446617.5092
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003406
(v1.0)
Bbs4NM_175325102774
33.36278.40908
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003406
(v1.0)
Bbs4NM_175325102774
33.205654.1243
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003406
(v1.0)
4895G0111H08-3Mm.200314AW537059102774
U030944NAP006006-001TC869944U,F3.28793.1582.70542.69522.75552.72892.7569
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003406
(v1.0)
1434460_atMm.200714Bbs4NM_175325.3102774
935.15320.85197.1500
0003406
(v1.0)
1449734_s_atMm.200714Bbs4NM_175325.3102774
3156.05925.975667.4177.9157.575
0003406
(v1.0)
1455823_atMm.200714Bbs4NM_175325.3102774
4284.8257354.975729.4750373.15
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003406
(v1.0)
A_51_P193000Bbs4NM_175325102774
11P1.080.583P
0003406
(v1.0)
A_52_P129354Bbs4NM_175325102774
11P0.5270.0995P
Proteome N/A