DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003588
GeneBrca1
Synonyms
Desc.breast cancer 1
LocusNM_009764 chr11:101350078-101413269(-)
DB links


Entrez 12189
MGI 104537
Ensembl ENSMUSG00000017146
Vega OTTMUSG00000002870
Featureprotein-coding
GO(BP)
  •   43 Terms
      double-strand break repair via homologous recombination (GO:0000724)
      DNA replication (GO:0006260)
      DNA repair (GO:0006281)
      postreplication repair (GO:0006301)
      double-strand break repair (GO:0006302)
      DNA recombination (GO:0006310)
      regulation of gene expression by genetic imprinting (GO:0006349)
      lipid metabolic process (GO:0006629)
      fatty acid metabolic process (GO:0006631)
      fatty acid biosynthetic process (GO:0006633)
      response to DNA damage stimulus (GO:0006974)
      cell cycle (GO:0007049)
      chromosome segregation (GO:0007059)
      centrosome cycle (GO:0007098)
      intrinsic apoptotic signaling pathway in response to DNA damage (GO:0008630)
      dosage compensation by inactivation of X chromosome (GO:0009048)
      response to ionizing radiation (GO:0010212)
      protein ubiquitination (GO:0016567)
      positive regulation of protein ubiquitination (GO:0031398)
      G2/M transition DNA damage checkpoint (GO:0031572)
      substrate adhesion-dependent cell spreading (GO:0034446)
      positive regulation of histone acetylation (GO:0035066)
      negative regulation of histone acetylation (GO:0035067)
      chordate embryonic development (GO:0043009)
      response to estrogen stimulus (GO:0043627)
      regulation of DNA methylation (GO:0044030)
      negative regulation of fatty acid biosynthetic process (GO:0045717)
      positive regulation of DNA repair (GO:0045739)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      centrosome duplication (GO:0051298)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      negative regulation of histone H3-K4 methylation (GO:0051572)
      negative regulation of histone H3-K9 methylation (GO:0051573)
      positive regulation of histone H3-K9 methylation (GO:0051574)
      protein autoubiquitination (GO:0051865)
      positive regulation of histone H4-K20 methylation (GO:0070512)
      positive regulation of cell cycle arrest (GO:0071158)
      cellular response to indole-3-methanol (GO:0071681)
      protein K6-linked ubiquitination (GO:0085020)
      regulation of cell motility (GO:2000145)
      positive regulation of histone H3-K9 acetylation (GO:2000617)
      positive regulation of histone H4-K16 acetylation (GO:2000620)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Ubiquitin mediated proteolysis (mmu04120)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003470
(v2.0)
Brca1NM_00976412189
1.8414548.298531.792517.536212.350419.190111.493421.534311.636414.5539
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003588
(v1.0)
Brca112189
Maternal RNA0.94035
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003470
(v2.0)
Brca112189
749/4090.3593600/4090.43571211/4095.12613586/4094.45524/409-1.9889121/409-2.342
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003470
(v2.0)
Brca112189
355/1850.4255286/1850.511043/1856.00592622/1855.137412/185-1.805349/185-2.4799
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003470
(v2.0)
Brca112189
43.717714330.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003470
(v2.0)
Brca112189
10.02911059.55
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003588
(v1.0)
Brca1NM_00976412189
50.185721.975413.05358.528998.12112
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003588
(v1.0)
Brca1NM_00976412189
431.727329.722213.30547.7472108.041
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003588
(v1.0)
Brca1NM_00976412189
52.47380.67343723.9757
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003588
(v1.0)
Brca1NM_00976412189
51.219621.754815.9584
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003588
(v1.0)
Brca1NM_00976412189
283.004119.672
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003588
(v1.0)
Brca1NM_00976412189
52.50430.66421417.5026
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003588
(v1.0)
Brca1NM_00976412189
12.08558.235088.04434
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003588
(v1.0)
Brca1NM_00976412189
84.5284118.572
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003588
(v1.0)
Brca1NM_00976412189
20.26425.40258
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003588
(v1.0)
Brca1NM_00976412189
6.70878.48195
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003588
(v1.0)
3864C0903H08-3Mm.1889Brca112189
U033456NAP001719-001Brca1;TC837904P48754U,F3.92233.75293.21533.30632.89473.12553.2561
0003588
(v1.0)
5073U35641.1Mm.1889Brca112189
U033456NAP001719-001Brca1;TC837904P48754U,F3.11843.06493.39193.28053.00143.08132.9694
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003588
(v1.0)
1424629_atMm.244975Brca1NM_009764.312189
523.05604.175158.125122.5253.525
0003588
(v1.0)
1427698_atMm.244975Brca1NM_009764.312189
54.62564.5553.07578.144.1
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003588
(v1.0)
A_51_P475523Brca1NM_00976412189
11P0.5150.095P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003588
(v1.0)
Brca112189
010010