DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003588
GeneBrca1
Synonyms
Descriptionbreast cancer 1
LocusNM_009764 UCSC: chr11:101350078-101413269(-) OLP: chr11:101350078-101413269(-)
DB links


Entrez 12189
MGI 104537
Ensembl ENSMUSG00000017146
Vega OTTMUSG00000002870
Featureprotein-coding
GO_BP
  •   43 Terms
      double-strand break repair via homologous recombination (GO:0000724)
      DNA replication (GO:0006260)
      DNA repair (GO:0006281)
      postreplication repair (GO:0006301)
      double-strand break repair (GO:0006302)
      DNA recombination (GO:0006310)
      regulation of gene expression by genetic imprinting (GO:0006349)
      lipid metabolic process (GO:0006629)
      fatty acid metabolic process (GO:0006631)
      fatty acid biosynthetic process (GO:0006633)
      response to DNA damage stimulus (GO:0006974)
      cell cycle (GO:0007049)
      chromosome segregation (GO:0007059)
      centrosome cycle (GO:0007098)
      intrinsic apoptotic signaling pathway in response to DNA damage (GO:0008630)
      dosage compensation by inactivation of X chromosome (GO:0009048)
      response to ionizing radiation (GO:0010212)
      protein ubiquitination (GO:0016567)
      positive regulation of protein ubiquitination (GO:0031398)
      G2/M transition DNA damage checkpoint (GO:0031572)
      substrate adhesion-dependent cell spreading (GO:0034446)
      positive regulation of histone acetylation (GO:0035066)
      negative regulation of histone acetylation (GO:0035067)
      chordate embryonic development (GO:0043009)
      response to estrogen stimulus (GO:0043627)
      regulation of DNA methylation (GO:0044030)
      negative regulation of fatty acid biosynthetic process (GO:0045717)
      positive regulation of DNA repair (GO:0045739)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      centrosome duplication (GO:0051298)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      negative regulation of histone H3-K4 methylation (GO:0051572)
      negative regulation of histone H3-K9 methylation (GO:0051573)
      positive regulation of histone H3-K9 methylation (GO:0051574)
      protein autoubiquitination (GO:0051865)
      positive regulation of histone H4-K20 methylation (GO:0070512)
      positive regulation of cell cycle arrest (GO:0071158)
      cellular response to indole-3-methanol (GO:0071681)
      protein K6-linked ubiquitination (GO:0085020)
      regulation of cell motility (GO:2000145)
      positive regulation of histone H3-K9 acetylation (GO:2000617)
      positive regulation of histone H4-K16 acetylation (GO:2000620)
GO_MF
GO_CC
KEGG
  •   1 Terms
      Ubiquitin mediated proteolysis (mmu04120)
Ver2_FPKM see DBTMEE:2003470 (v2.0)
SPR_Histone_Erkek_5KaroundTSS N/A
SPR_Histone_Erkek_2KaroundTSS N/A
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003588
(v1.0)		Brca1NM_00976412189
50.185721.975413.05358.528998.12112
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003588
(v1.0)		Brca1NM_00976412189
52.47380.67343723.9757
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003588
(v1.0)		Brca1NM_00976412189
51.219621.754815.9584
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003588
(v1.0)		Brca1NM_00976412189
52.50430.66421417.5026
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003588
(v1.0)		Brca1NM_00976412189
12.08558.235088.04434
Illumina_Oo_2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003588
(v1.0)		Brca1NM_00976412189
20.26425.40258
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003588
(v1.0)		Brca1NM_00976412189
6.70878.48195
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003588
(v1.0)		3864C0903H08-3Mm.1889Brca112189
U033456NAP001719-001Brca1;TC837904P48754U,F3.92233.75293.21533.30632.89473.12553.2561
0003588
(v1.0)		5073U35641.1Mm.1889Brca112189
U033456NAP001719-001Brca1;TC837904P48754U,F3.11843.06493.39193.28053.00143.08132.9694
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003588
(v1.0)		1424629_atMm.244975Brca1NM_009764.312189
523.05604.175158.125122.5253.525
0003588
(v1.0)		1427698_atMm.244975Brca1NM_009764.312189
54.62564.5553.07578.144.1
Agilent44K
DBTMEEProbe_IDGeneAccEntrezOo1_xFoldOo1_pValOo1_FlagOo2_xFoldOo2_pValOo2_Flag
0003588
(v1.0)		A_51_P475523Brca1NM_00976412189
11P0.5150.095P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003588
(v1.0)		Brca112189
010010