DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003589
GeneBrca2
SynonymsFancd1
RAB163
Desc.breast cancer 2
LocusNM_009765 chr5:151325198-151372324(+)
NM_001081001 chr5:151325205-151372324(+)
DB links


Entrez 12190
MGI 109337
Ensembl ENSMUSG00000041147
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003471
(v2.0)
Brca2NM_001081001,NM_00976512190
0.60383122.431326.309254.092934.98695.871864.0010318.679557.38465.06495
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003589
(v1.0)
Brca212190
2-Cell Transient0.99784
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003471
(v2.0)
Brca212190
588/3570.2065402/3570.0549104/3571.7873246/3570.789782/357-0.0637524/357-0.0456
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003471
(v2.0)
Brca212190
291/1710.2528199/1710.10298/1712.7137218/1711.667110/171-1.9353112/171-1.1989
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003471
(v2.0)
Brca212190
37.656910834.87
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003471
(v2.0)
Brca212190
15.82336922.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003589
(v1.0)
Brca2NM_001081001,NM_00976512190
24.197918.857841.84425.11752.85351
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003589
(v1.0)
Brca2FR246580,NM_001081001,NM_00976512190
80.429593.567196.35698.430910.2475
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003589
(v1.0)
Brca2NM_001081001,NM_00976512190
25.30110.22935220.5742
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003589
(v1.0)
Brca2NM_001081001,NM_00976512190
24.696418.668414.2913
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003589
(v1.0)
Brca2FR246580,NM_001081001,NM_00976512190
154.802121.533
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003589
(v1.0)
Brca2NM_001081001,NM_00976512190
25.31580.22621115.6742
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003589
(v1.0)
Brca2NM_001081001,NM_00976512190
38.741124.251941.212
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003589
(v1.0)
Brca2FR246580,NM_001081001,NM_00976512190
110.70691.8047
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003589
(v1.0)
Brca2NM_001081001,NM_00976512190
66.8925134.801
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003589
(v1.0)
Brca2NM_001081001,NM_00976512190
26.690332.1455
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003589
(v1.0)
8658H3069F08-3Brca212190
U006487NAP006302-001Brca2;TC910555,TC910554P97929U,F,23.11763.10013.13433.11213.00232.96822.9796
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003589
(v1.0)
1419076_a_atMm.236256Brca2NM_001081001.1,NM_009765.212190
606.5759521232.575414265.85
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003589
(v1.0)
A_51_P451106Brca2NM_00976512190
11P1.0750.602P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003589
(v1.0)
Brca212190
100100