DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003593
GeneBrd3
SynonymsFsrg2
ORFX
RINGL3
Desc.bromodomain containing 3
LocusNM_023336 chr2:27301101-27330918(-)
NM_001113574 chr2:27301101-27331193(-)
NM_001113573 chr2:27301101-27331193(-)
DB links


Entrez 67382
MGI 1914632
Ensembl ENSMUSG00000026918
Vega OTTMUSG00000012035
Featureprotein-coding
GO(BP)
  •   4 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      chromatin modification (GO:0016568)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003475
(v2.0)
Brd3NM_001113573,NM_001113574,NM_023336,NR_10610267382
10.77764.480935.2788241.695929.250814.230822.84399.440423.624612.4926
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003593
(v1.0)
Brd367382
MGA0.99233
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003475
(v2.0)
Brd367382
726/534-0.0696420/534-0.4616451/5343.32811090/5342.355243/534-1.5547278/534-1.536
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003475
(v2.0)
Brd367382
389/1810.5883211/1810.1045428/1814.75241025/1813.814316/181-1.3874108/181-1.3322
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003475
(v2.0)
Brd367382
49.017914733.35
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003475
(v2.0)
Brd367382
9.85881069.3
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
4.65973.6515314.537120.28534.43863
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
32.929725.690270.8598107.90416.3588
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
4.872153.940653.9839
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
4.75573.614866.98871
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
64.9093138.86
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
4.874983.886687.66498
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
13.459119.586216.367
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
125.411106.289
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
4.034666.73221
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003593
(v1.0)
Brd3NM_001113573,NM_001113574,NM_02333667382
8.960946.02181
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003593
(v1.0)
15041J1012G09-3Mm.28721Brd367382
3.63823.90884.21673.92213.57173.81883.6026
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003593
(v1.0)
1436960_atMm.28721Brd3NM_023336.4,NM_001113574.1,NM_001113573.167382
000741.325745.525
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003593
(v1.0)
A_51_P178575Brd3AF26919367382
11P1.4390.173P
0003593
(v1.0)
A_52_P491842Brd3NM_02333667382
11P0.9050.501P
0003593
(v1.0)
A_52_P652104Brd3NM_02333667382
11P1.3480.214P
Proteome N/A