DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003598
GeneBrdt
SynonymsBrd6
Fsrg3
Desc.bromodomain, testis-specific
LocusNM_054054 chr5:107760213-107816077(+)
NM_001079873 chr5:107760213-107779760(+)
DB links


Entrez 114642
MGI 1891374
Ensembl ENSMUSG00000029279
Vega OTTMUSG00000017134
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003480
(v2.0)
BrdtNM_001079873,NM_054054114642
12.941172.796334.199166.08440.61631.361751.08791254.43638.36451.97067
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003598
(v1.0)
Brdt114642
Minor ZGA0.92942
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003480
(v2.0)
Brdt114642
574/3400.242451/3400.290640/3400.4986253/3400.8999155/3400.91621184/3401.1983
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003480
(v2.0)
Brdt114642
328/1780.3672201/1780.058827/1780.8375130/1780.868755/1780.3561536/1780.987
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003480
(v2.0)
Brdt114642
37.08988046.36
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003480
(v2.0)
Brdt114642
15.51635727.22
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
179.568230.317123.56128.12260.75256
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
421.443555.639314.92281.80744.50699
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
187.7554.73275251.281
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
183.267228.005188.018
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
409.589340.647
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
187.8644.66792206.211
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
114.39927.153526.5669
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
39.372534.971
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
171.813174.216
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003598
(v1.0)
BrdtNM_001079873,NM_054054114642
185.283191.769
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003598
(v1.0)
10152H3091G07-3Mm.24536Fsrg3114642
U005927NAP021235-001Fsrg3;TC921106Q91Y44U,F,23.91694.22973.68723.83962.73612.75612.4531
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003598
(v1.0)
1450178_atMm.182836BrdtNM_054054.2,NM_001079873.1114642
73.025168.1598.4500
0003598
(v1.0)
1435502_a_atMm.182836BrdtNM_054054.2,NM_001079873.1114642
1661.2252885.6253076.400
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003598
(v1.0)
A_51_P258125BrdtNM_054054114642
11P0.6840.181P
0003598
(v1.0)
A_52_P70787BrdtAK078663114642
11P0.5460.105P
Proteome N/A