DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0003616

Gene

Brwd1

Synonyms

G1-403-16
repro5
Wdr9

Description

bromodomain and WD repeat domain containing 1

Locus

NM_145125 UCSC: chr16:96213699-96304035(-) OLP: chr16:96213699-96304035(-)
NM_001103179 UCSC: chr16:96223155-96304035(-) OLP: chr16:96223155-96304035(-)
NM_176928 UCSC: chr16:96288275-96304035(-) OLP: chr16:96288275-96304035(-)

DB links

Entrez 93871
MGI 1890651
Ensembl ENSMUSG00000022914
Vega OTTMUSG00000020395

Feature

protein-coding

GO_BP

5 Terms

GO_MF

1 Terms

GO_CC

3 Terms

KEGG

see DBTMEE:2003501 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0003616 (v1.0)	Brwd1	NM_001103179,NM_145125,NM_176928	93871	91.4347	76.6618	59.3752	64.3328	22.7795

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0003616 (v1.0)	Brwd1	NM_001103179,NM_145125,NM_176928	93871	95.6033	3.12286	83.6397

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0003616 (v1.0)	Brwd1	NM_001103179,NM_145125,NM_176928	93871	93.3183	75.892	72.1686

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0003616 (v1.0)	Brwd1	NM_001103179,NM_145125,NM_176928	93871	95.6589	3.08009	79.1521

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0003616 (v1.0)	Brwd1	NM_001103179,NM_145125,NM_176928	93871	54.9722	62.1159	57.3939

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0003616 (v1.0)	Brwd1	NM_001103179,NM_145125,NM_176928	93871	90.7945	30.6744

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0003616 (v1.0)	Brwd1	NM_001103179,NM_145125,NM_176928	93871	6.75158	8.1497

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0003616 (v1.0)	5559	H3002G10-3	Mm.131039	Wdr9	93871				TC909862,TC909861		U,F,2	3.9134	3.9905	3.4066	3.4868	3.6431	3.5673	3.5428
0003616 (v1.0)	10169	H3092A08-3	Mm.131039	Wdr9	93871				TC909861		U,F,2	2.9644	2.8965	2.6912	2.7054	2.5316	2.5379	2.5729
0003616 (v1.0)	20873	L0817C10-3		Wdr9	93871				TC909862,TC909861		U,F,2	2.8934	2.81	2.0625	2.3798	1.9893	2.3633	2.432

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0003616 (v1.0)	1427322_at	Mm.240871	Brwd1	NM_145125.3,NM_001103179.1,NM_176928.1	93871	324.2	339	221.9	190.5	141.1
0003616 (v1.0)	1433955_at	Mm.240871	Brwd1	NM_145125.3,NM_001103179.1,NM_176928.1	93871	87.65	145.2	0	281.05	469.325

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0003616 (v1.0)	A_51_P181538	Brwd1	NM_145125	93871	1	1	P	0.776	0.264	P
0003616 (v1.0)	A_52_P223521	Brwd1	AK086927	93871	1	1	P	1.269	0.261	P
0003616 (v1.0)	A_52_P301223	Brwd1	BC056618	93871	1	1	P	1.076	0.641	P
0003616 (v1.0)	A_52_P609448	Brwd1	NM_145125	93871	1	1	P	0.425	0.101	P

N/A