DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003852
GeneCalm1
Synonyms
Desc.calmodulin 1
LocusNM_009790 chr12:101437751-101448016(+)
DB links


Entrez 12313
MGI 88251
Ensembl ENSMUSG00000001175
Vega OTTMUSG00000016979
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003741
(v2.0)
Calm1NM_00979012313
152.34998.1481137.66348.90926.744282.577296.6553110.91938.109499.1335
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003852
(v1.0)
Calm112313
Minor ZGA0.96851
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003741
(v2.0)
Calm112313
790/4530.2889484/453-0.0207319/4533.0615767/4532.084954/453-0.9974483/453-0.5055
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003741
(v2.0)
Calm112313
433/1540.974241/1540.527287/1544.3948607/1543.28914/154-1.3406119/154-0.9624
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003741
(v2.0)
Calm112313
65.892516938.99
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003741
(v2.0)
Calm112313
6.836967.12
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003852
(v1.0)
Calm1NM_00979012313
101.9895.106536.390318.52868.4598
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003852
(v1.0)
Calm1NM_00979012313
202.655157.39858.685134.0806140.182
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003852
(v1.0)
Calm1NM_00979012313
106.62955.7155103.763
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003852
(v1.0)
Calm1NM_00979012313
104.08194.151582.077
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003852
(v1.0)
Calm1NM_00979012313
104.74492.919
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003852
(v1.0)
Calm1NM_00979012313
106.69154.952490.0193
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003852
(v1.0)
Calm1NM_00979012313
33.691817.889526.324
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003852
(v1.0)
Calm1NM_00979012313
50.317379.1685
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003852
(v1.0)
Calm1NM_00979012313
345.81594.5279
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003852
(v1.0)
Calm1NM_00979012313
100.495138.904
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003852
(v1.0)
3283C0628F09-3Mm.34246Calm112313
U043305NAP094874-001Calm1;TC924172Q9D6G4U,F,23.78853.74063.94733.85943.94724.0444.4875
0003852
(v1.0)
13000H3156D12-3Mm.222925AI256814104772
U043305NAP031828-1Calm1;TC924172Q9D6G4U,F,24.08464.03264.21273.95174.62294.24794.4967
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003852
(v1.0)
1417365_a_atMm.285993Calm1NM_009790.412313
543.85547.9434.425159.55705.35
0003852
(v1.0)
1454611_a_atMm.285993Calm1NM_009790.412313
438.1257.775463.025236.725897.75
0003852
(v1.0)
1455571_x_atMm.285993Calm1NM_009790.412313
858.8472.475796.95322.31159.2
0003852
(v1.0)
1433592_atMm.285993Calm1NM_009790.412313
425.725636.025543.350654.925
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003852
(v1.0)
A_51_P465023Calm1NM_00979012313
11P0.6990.187P
0003852
(v1.0)
A_51_P503937Calm1NM_00979012313
11P0.60.148P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003852
(v1.0)
Calm112313
911530427