DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003860
GeneCalr
SynonymsCalregulin
CRT
Desc.calreticulin
LocusNM_007591 chr8:87365987-87370830(-)
DB links


Entrez 12317
MGI 88252
Ensembl ENSMUSG00000003814
Vega OTTMUSG00000022277
Featureprotein-coding
GO(BP)
  •   20 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      peptide antigen assembly with MHC class I protein complex (GO:0002502)
      protein folding (GO:0006457)
      protein export from nucleus (GO:0006611)
      cell cycle arrest (GO:0007050)
      positive regulation of cell proliferation (GO:0008284)
      positive regulation of gene expression (GO:0010628)
      negative regulation of translation (GO:0017148)
      cortical actin cytoskeleton organization (GO:0030866)
      negative regulation of intracellular steroid hormone receptor signaling pathway (GO:0033144)
      protein localization to nucleus (GO:0034504)
      regulation of meiosis (GO:0040020)
      negative regulation of neuron differentiation (GO:0045665)
      positive regulation of DNA replication (GO:0045740)
      positive regulation of cell cycle (GO:0045787)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      negative regulation of retinoic acid receptor signaling pathway (GO:0048387)
      positive regulation of phagocytosis (GO:0050766)
      protein stabilization (GO:0050821)
      cellular senescence (GO:0090398)
GO(MF)
GO(CC)
KEGG
  •   4 Terms
      Protein processing in endoplasmic reticulum (mmu04141)
      Phagosome (mmu04145)
      Antigen processing and presentation (mmu04612)
      Chagas disease (American trypanosomiasis) (mmu05142)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003749
(v2.0)
CalrNM_00759112317
793.765237.426153.325122.34125.851604.919562.339145.032147.735584.584
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003860
(v1.0)
Calr12317
Maternal RNA0.99029
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003749
(v2.0)
Calr12317
617/471-0.123374/471-0.4478247/4712.639713/4711.923822/471-2.3109205/471-1.7919
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003749
(v2.0)
Calr12317
296/217-0.0646174/217-0.4325228/2173.6002634/2172.86373/217-3.731258/217-2.4724
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003749
(v2.0)
Calr12317
64.504715541.62
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003749
(v2.0)
Calr12317
21.949411019.95
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003860
(v1.0)
CalrNM_00759112317
246.754105.83490.962887.2035400.477
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003860
(v1.0)
CalrNM_00759112317
700.954241.533222.867215.201845.571
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003860
(v1.0)
CalrNM_00759112317
258.004290.288115.468
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003860
(v1.0)
CalrNM_00759112317
251.838104.772107.536
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003860
(v1.0)
CalrNM_00759112317
922.365853.1
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003860
(v1.0)
CalrNM_00759112317
258.154286.312117.942
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003860
(v1.0)
CalrNM_00759112317
84.217384.1985102.466
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003860
(v1.0)
CalrNM_00759112317
231.347303.722
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003860
(v1.0)
CalrNM_00759112317
194.89630.4331
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003860
(v1.0)
CalrNM_00759112317
5.594129.55931
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003860
(v1.0)
1281C0192E09-3Mm.1971Calr12317
U030041NAP010008-001Calr;TC852298,TC852291,TC852285P14211U,F,22.943.10413.19713.04992.85423.02083.1114
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003860
(v1.0)
1417606_a_atMm.1971CalrNM_007591.312317
1571.175511.125794.55360.251267.075
0003860
(v1.0)
1433806_x_atMm.1971CalrNM_007591.312317
909.2384.375504.1263.45753.75
0003860
(v1.0)
1456170_x_atMm.1971CalrNM_007591.312317
1014.8370.8510.95287.1839.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003860
(v1.0)
A_51_P416419CalrNM_00759112317
11P1.0330.8P
0003860
(v1.0)
A_52_P672212CalrNM_00759112317
11P0.6130.145P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003860
(v1.0)
Calr12317
424543630415325