DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003905
GeneCapns1
SynonymsCapa-4
Capa4
Capn4
D7Ertd146e
Desc.calpain, small subunit 1
LocusNM_009795 chr7:30971961-30980067(-)
DB links


Entrez 12336
MGI 88266
Ensembl ENSMUSG00000001794
Vega OTTMUSG00000022203
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003795
(v2.0)
Capns1NM_00979512336
309.27236.044833.78234.2837910.3402453.061117.60543.775710.6287474.136
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003905
(v1.0)
Capns112336
Maternal RNA0.97972
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003795
(v2.0)
Capns112336
726/533-0.0669399/533-0.5327126/5331.4993373/5330.8134138/5330.1075844/5330.0636
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003795
(v2.0)
Capns112336
306/219-0.0301171/219-0.470692/2192.2876267/2191.606157/2190.1138342/2190.0435
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003795
(v2.0)
Capns112336
63.421619732.19
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003795
(v2.0)
Capns112336
24.73759127.18
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003905
(v1.0)
Capns1NM_00979512336
37.473423.40383.192797.1839183.2372
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003905
(v1.0)
Capns1NM_00979512336
735.807408.49752.5756228.7691618.73
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003905
(v1.0)
Capns1NM_00979512336
39.1819113.10425.534
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003905
(v1.0)
Capns1NM_00979512336
38.245423.168832.447
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003905
(v1.0)
Capns1NM_00979512336
255.367306.866
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003905
(v1.0)
Capns1NM_00979512336
39.2046111.55535.5868
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003905
(v1.0)
Capns1NM_00979512336
2.956036.936357.34626
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003905
(v1.0)
Capns1NM_00979512336
318.308286.084
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003905
(v1.0)
Capns1NM_00979512336
39.577111.8157
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003905
(v1.0)
Capns1NM_00979512336
1.023460.924134
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003905
(v1.0)
19576L0282E05-3Mm.6534Capns112336
U028370NAP098407-001Capns1;TC886353,TC886351O88456U2.97243.05863.11813.04063.0913.12323.1658
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003905
(v1.0)
1426400_a_atMm.439782Capns1NM_009795.312336
182.225204.85116.175138.15549.125
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003905
(v1.0)
Capns112336
0.670.6710.670.673