DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003997
GeneCbx1
SynonymsCbx-rs2
HP1B
Hp1beta
M31
MOD1
Desc.chromobox 1
LocusNM_007622 chr11:96650450-96669954(+)
DB links


Entrez 12412
MGI 105369
Ensembl ENSMUSG00000018666
Vega OTTMUSG00000001636
Featureprotein-coding
GO(BP)
  •   1 Terms
      negative regulation of transcription, DNA-dependent (GO:0045892)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003889
(v2.0)
Cbx1NM_00762212412
15.732340.602475.4779.6655616.217956.19829.66958.240615.37869.6885
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003997
(v1.0)
Cbx112412
Minor ZGA0.97677
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003889
(v2.0)
Cbx112412
645/3860.2273459/3860.1334129/3861.9863330/3861.100146/386-0.9956300/386-0.9595
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003889
(v2.0)
Cbx112412
358/1670.5844221/1670.2864124/1673.082303/1672.173918/167-1.1135123/167-1.0315
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003889
(v2.0)
Cbx112412
43.891113133.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003889
(v2.0)
Cbx112412
22.94339923.18
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
42.189952.44627.2056711.235820.9728
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
67.720256.62839.0995615.813533.887
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
44.11345.7534657.22
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
43.059151.919643.157
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
95.125195.153
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
44.13915.6746647.3331
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
6.6713210.848610.6887
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
11.024212.9871
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003997
(v1.0)
Cbx1NM_00762212412
86.485111.1141
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003997
(v1.0)
Cbx1NM_00762212412
27.454819.8121
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003997
(v1.0)
11520H3117E07-3Mm.29055Cbx112412
U013257NAP105226-1Cbx1;TC869268,TC869267,TC869266,TC869264Q9CYJ8U,F,24.14514.27683.59343.59173.68954.09174.3032
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003997
(v1.0)
1433718_a_atMm.29055Cbx1NM_007622.312412
603.625500240.075191.975359.075
0003997
(v1.0)
1436266_x_atMm.29055Cbx1NM_007622.312412
737.05631.7285.875259.5457.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003997
(v1.0)
A_51_P495012Cbx1NM_00762212412
11P1.2310.285P
0003997
(v1.0)
A_52_P255804Cbx1AK08024312412
11P0.8190.296P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003997
(v1.0)
Cbx112412
132143