DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004006
GeneCc2d1a
SynonymsFreud-1
Desc.coiled-coil and C2 domain containing 1A
LocusNM_145970 chr8:86656727-86671652(-)
DB links


Entrez 212139
MGI 2384831
Ensembl ENSMUSG00000036686
Vega OTTMUSG00000030574
Featureprotein-coding
GO(BP)
  •   5 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      signal transduction (GO:0007165)
      positive regulation of I-kappaB kinase/NF-kappaB cascade (GO:0043123)
GO(MF)
  •   4 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001078)
      DNA binding (GO:0003677)
      signal transducer activity (GO:0004871)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003898
(v2.0)
Cc2d1aNM_145970212139
20.365339.491446.28977.548415.8206110.30716.5532465.65918.991446.72696
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004006
(v1.0)
Cc2d1a212139
Maternal RNA0.96421
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003898
(v2.0)
Cc2d1a212139
842/5190.1849499/519-0.1725787/5194.17021939/5193.226635/519-1.8034280/519-1.4847
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003898
(v2.0)
Cc2d1a212139
421/2210.4153242/2210.0147714/2215.21781683/2214.244710/221-2.2976104/221-1.6725
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003898
(v2.0)
Cc2d1a212139
78.52114753.42
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003898
(v2.0)
Cc2d1a212139
21.99928625.58
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
41.060732.20435.610384.040924.57941
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
1135.37908.679169.559171.9161.887
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
42.93277.447835.1356
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
41.906631.88148.7181
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
1292.8717.88
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
42.95777.3457953.4323
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
5.194343.901676.29769
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
106.22968.8136
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004006
(v1.0)
Cc2d1aNM_145970212139
4.894216.1301
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004006
(v1.0)
Cc2d1aNM_145970212139
0.2375250.367669
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004006
(v1.0)
18332L0201C03-3Mm.41424MGC27560212139
U030024NAP007255-001MGC27560;TC8154543.09133.09123.09483.15273.53493.26663.3791
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004006
(v1.0)
1426422_atMm.41424Cc2d1aNM_145970.1212139
81.37566.760030.65
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004006
(v1.0)
A_51_P121900BC016188NM_145970212139
11P0.8360.545P
Proteome N/A