DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004094
GeneCcdc28a
Synonyms
Desc.coiled-coil domain containing 28A
LocusNM_144820 chr10:17933491-17954787(-)
DB links


Entrez 215814
MGI 2443508
Ensembl ENSMUSG00000059554
Vega OTTMUSG00000036976
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003985
(v2.0)
Ccdc28aNM_144820215814
15.94324.894446.561212.228112.56714.710713.7260641.723111.4927.94794
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004094
(v1.0)
Ccdc28a215814
Minor ZGA0.9776
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003985
(v2.0)
Ccdc28a215814
510/2600.4577414/2600.5532841/2605.23062872/2604.783430/260-1.0333176/260-1.1555
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003985
(v2.0)
Ccdc28a215814
336/1680.4847276/1680.5971766/1685.69122324/1685.100517/168-1.199979/168-1.669
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003985
(v2.0)
Ccdc28a215814
43.011610441.36
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003985
(v2.0)
Ccdc28a215814
19.38487924.54
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
25.880632.35149.094298.724852.63399
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
31.400635.465710.531110.53113.10127
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
27.06065.8305235.296
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
26.413832.026530.9563
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
36.009335.3432
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
27.07635.7506633.9518
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
8.419898.424197.98055
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
10.417310.942
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004094
(v1.0)
Ccdc28aNM_144820215814
1.480172.54179
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004094
(v1.0)
Ccdc28aNM_144820215814
10.21353.92439
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004094
(v1.0)
21637L0900E06-3Mm.1499161700009P13Rik215814
U031571NAP033631-1MGC19351;TC832108Q91WQ2U,F,23.39233.36663.12543.5323.39333.45233.5058
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004094
(v1.0)
1425345_atMm.296565Ccdc28aNM_144820.3215814
55.425137.55000
0004094
(v1.0)
1440825_s_atMm.296565Ccdc28aNM_144820.3215814
0180.55292.10284.075
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004094
(v1.0)
A_51_P3426221700009P13RikNM_144820215814
11P1.1960.449P
Proteome N/A