DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004122
GeneCcdc6
Synonyms
Desc.coiled-coil domain containing 6
LocusNM_001111121 chr10:69559869-69655948(+)
DB links


Entrez 76551
MGI 1923801
Ensembl ENSMUSG00000048701
Vega OTTMUSG00000032767
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004010
(v2.0)
Ccdc6NM_00111112176551
15.7638271.445640.487431.488124.55610.529315.2417725.773147.4328.92669
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004122
(v1.0)
Ccdc676551
Minor ZGA0.93784
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004010
(v2.0)
Ccdc676551
745/5000.0624424/500-0.3533155/5001.8861497/5001.3183115/500-0.062765/5000.0142
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004010
(v2.0)
Ccdc676551
383/1770.598203/1770.0811142/1773.1977439/1772.624777/1770.842440/1770.7112
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004010
(v2.0)
Ccdc676551
60.584516636.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004010
(v2.0)
Ccdc676551
16.125910715.07
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004122
(v1.0)
Ccdc6NM_00111112176551
282.243441.761320.70486.291510.5812
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004122
(v1.0)
Ccdc6NM_00111112176551
295.1115.76498481.971
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004122
(v1.0)
Ccdc6NM_00111112176551
288.057437.326536.43
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004122
(v1.0)
Ccdc6FR163015,NM_00111112176551
3320.46413.19
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004122
(v1.0)
Ccdc6NM_00111112176551
295.2825.68602588.338
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004122
(v1.0)
Ccdc6NM_00111112176551
296.92283.3179102.192
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004122
(v1.0)
Ccdc6FR163015,NM_00111112176551
98.7714120.865
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004122
(v1.0)
Ccdc6NM_00111112176551
454.738251.413
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004122
(v1.0)
Ccdc6NM_00111112176551
201.785226.539
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004122
(v1.0)
10761H3103C02-3Mm.38862810012H18Rik76551
2.17172.21472.32811.87382.19211.97112.2694
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004122
(v1.0)
1428311_atMm.281741Ccdc6NM_001111121.176551
2105.8754893.353785.25231.15523.2
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004122
(v1.0)
Ccdc676551
6857115