DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004161
GeneCcdc90b
Synonyms
Desc.coiled-coil domain containing 90B
LocusNM_025515 chr7:99709659-99730804(+)
NM_001162918 chr7:99709659-99730804(+)
DB links


Entrez 66365
MGI 1913615
Ensembl ENSMUSG00000030613
Vega OTTMUSG00000031425
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004047
(v2.0)
Ccdc90bNM_001162918,NM_02551566365
5.9410528.013669.43357.6843410.8084.336311.066754.131910.4074.45457
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004161
(v1.0)
Ccdc90b66365
Minor ZGA0.96837
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004047
(v2.0)
Ccdc90b66365
481/3090.1252364/3090.119864/3091.2964174/3090.499380/3090.1069447/309-0.0665
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004047
(v2.0)
Ccdc90b66365
238/1400.2511175/1400.204462/1402.3291155/1401.461727/140-0.3064132/140-0.678
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004047
(v2.0)
Ccdc90b66365
50.685111344.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004047
(v2.0)
Ccdc90b66365
17.59297623.15
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
29.093748.0535.710787.437297.82435
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
349.222474.72834.493531.715159.2727
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
30.42012.1726952.4269
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
29.69347.570640.0559
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
3075.52606.61
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
30.43782.1429343.9319
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
5.287297.1817.14769
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
105.606435.249
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
16.687311.0255
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004161
(v1.0)
Ccdc90bNM_001162918,NM_02551566365
42.552641.2867
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004161
(v1.0)
12920H3155B05-52310015N07Rik66365
2310015N07Rik3.00792.91532.91962.7252.70242.66872.6941
0004161
(v1.0)
19677L0289E05-3Mm.211732310015N07Rik66365
U040320NAP106878-1TC810785,TC810572U,F,23.39833.37592.69592.79182.52662.64082.5488
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004161
(v1.0)
1428505_atMm.21173Ccdc90bNM_025515.3,NM_001162918.166365
620.125957.15488.425176.95383.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004161
(v1.0)
A_52_P6652422310015N07RikNM_02551566365
11P0.5860.121P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004161
(v1.0)
Ccdc90b66365
010010