DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004199
GeneCcm2
Synonyms
Desc.cerebral cavernous malformation 2
LocusNM_001190343 chr11:6446890-6496764(+)
NM_146014 chr11:6446890-6496764(+)
NM_001190344 chr11:6460186-6496737(+)
DB links


Entrez 216527
MGI 2384924
Ensembl ENSMUSG00000000378
Vega OTTMUSG00000005120
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004084
(v2.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
23.04211.983610.80579.266846.3021312.339343.176313.27025.9184114.4733
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004199
(v1.0)
Ccm2216527
Maternal RNA0.98098
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004084
(v2.0)
Ccm2216527
596/3490.2586350/349-0.111792/3491.6438293/3491.073541/349-1.0141215/349-1.2922
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004084
(v2.0)
Ccm2216527
283/1320.5838148/1320.048587/1322.8892274/1322.36297/132-2.031440/132-2.2791
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004084
(v2.0)
Ccm2216527
51.633310847.81
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004084
(v2.0)
Ccm2216527
9.56416215.43
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
12.46187.50286.918424.364730.5774
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
63.77625.244222.074322.8577139.92
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
13.02998.422198.18572
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
12.71857.427479.85365
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
35.494954.6964
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
13.03758.3068510.8072
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
6.405384.214294.07252
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
33.236631.5748
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004199
(v1.0)
Ccm2NM_001190343,NM_001190344,NM_146014216527
2.142022.19542
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004199
(v1.0)
4039C0912H09-3Mm.221271MGC37115216527
U012301NAP010329-001MGC37115;TC8589323.29373.31513.52713.73723.25613.43443.7346
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004199
(v1.0)
1434648_a_atMm.221271Ccm2NM_146014.3,NM_001190344.1,NM_001190343.1216527
206.30188.676.125399.725
0004199
(v1.0)
1456290_x_atMm.221271Ccm2NM_146014.3,NM_001190344.1,NM_001190343.1216527
0000188.75
Agilent44K N/A
Proteome N/A