DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004243
GeneCcrn4l
SynonymsCcr4
nocturnin
Desc.CCR4 carbon catabolite repression 4-like (S. cerevisiae)
LocusNM_009834 chr3:51028369-51055576(+)
DB links


Entrez 12457
MGI 109382
Ensembl ENSMUSG00000023087
Vega OTTMUSG00000027519
Featureprotein-coding
GO(BP)
  •   3 Terms
      deadenylation-dependent decapping of nuclear-transcribed mRNA (GO:0000290)
      cytoplasmic mRNA processing body assembly (GO:0033962)
      rhythmic process (GO:0048511)
GO(MF)
GO(CC)
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004129
(v2.0)
Ccrn4lNM_00983412457
2.05294126.409122.22540.02724.873565.694367.50736113.2778.114085.45102
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004243
(v1.0)
Ccrn4l12457
Maternal RNA0.96776
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004129
(v2.0)
Ccrn4l12457
773/4900.1446462/490-0.2007156/4901.9238335/4900.7796153/4900.3757994/4900.4204
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004129
(v2.0)
Ccrn4l12457
397/1880.5631229/1880.1676151/1883.2042303/1882.005464/1880.494385/1880.4328
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004129
(v2.0)
Ccrn4l12457
101.388118156.02
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004129
(v2.0)
Ccrn4l12457
26.957110226.43
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
131.49284.424529.76993.367045.28104
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
167.55499.240834.76994.026246.35238
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
137.4870.75078292.1089
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
134.20183.576883.9549
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
100.78496.7716
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
137.5670.74049992.0789
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
27.56233.251025.63897
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
3.982916.91505
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004243
(v1.0)
Ccrn4lNM_00983412457
32.005446.2183
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004243
(v1.0)
Ccrn4lNM_00983412457
157.457199.952
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004243
(v1.0)
20557L0703H10-3Ccrn4l12457
3.09432.82382.70732.94543.62253.23673.5042
0004243
(v1.0)
22138L0943G09-3Mm.86541Ccrn4l12457
NAP056041-1Ccrn4lTC911657O357102.48362.64512.47882.54992.52322.47662.449
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004243
(v1.0)
1425837_a_atMm.86541Ccrn4lNM_009834.212457
1660.8253647.6751282.45448.075577.2
0004243
(v1.0)
1436362_x_atMm.86541Ccrn4lNM_009834.212457
1247.875143.6366.575375.625142.025
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004243
(v1.0)
A_51_P189777Ccrn4lNM_00983412457
11P1.1150.473P
Proteome N/A