DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004255
GeneCcz1
Synonyms
Desc.CCZ1 vacuolar protein trafficking and biogenesis associated
LocusNM_177682 chr5:144748778-144775722(-)
DB links


Entrez 231874
MGI 2141070
Ensembl ENSMUSG00000029617
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004143
(v2.0)
Ccz1NM_177682231874
29.735428.755574.912255.363565.781313.152948.454761.663657.957812.0222
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004255
(v1.0)
Ccz1231874
Minor ZGA0.99691
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004143
(v2.0)
Ccz1231874
607/3750.1815438/3750.107691/3751.5279278/3750.89577/375-0.2235512/375-0.1497
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004143
(v2.0)
Ccz1231874
301/1630.3701190/1630.104385/1632.575248/1631.92059/163-2.0054131/163-0.9069
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004143
(v2.0)
Ccz1231874
87.07111774.42
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004143
(v2.0)
Ccz1231874
19.97224643.42
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004255
(v1.0)
Ccz1NM_177682231874
29.884551.630941.169145.616434.3308
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004255
(v1.0)
Ccz1FR341817,NM_177682231874
96.9325111.402100.835123.56191.734
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004255
(v1.0)
Ccz1NM_177682231874
31.24710.874556.3305
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004255
(v1.0)
Ccz1NM_177682231874
30.500251.112545.6446
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004255
(v1.0)
Ccz1FR341817,NM_177682231874
469.3281061.57
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004255
(v1.0)
Ccz1NM_177682231874
31.265110.725650.0615
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004255
(v1.0)
Ccz1NM_177682231874
38.116244.044439.9967
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004255
(v1.0)
Ccz1FR341817,NM_177682231874
180.833263.996
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004255
(v1.0)
Ccz1NM_177682231874
10.236729.3004
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004255
(v1.0)
Ccz1NM_177682231874
63.958976.968
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004255
(v1.0)
12306H3140C07-3Mm.29605231874
U026928NAP006668-001AU022870TC869450U,F,23.7443.6563.6123.64473.70853.51363.574
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004255
(v1.0)
1433554_atMm.320432Ccz1NM_177682.3231874
604.051147.5751168.825806.325639.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004255
(v1.0)
A_51_P395293AU022870NM_177682231874
11P0.940.648P
Proteome N/A