DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004379
GeneCdc42se1
SynonymsSCIP1
Spec1
Desc.CDC42 small effector 1
LocusNM_172395 chr3:95032702-95040331(+)
NM_001038708 chr3:95032874-95038499(+)
DB links


Entrez 57912
MGI 1889510
Ensembl ENSMUSG00000046722
Vega OTTMUSG00000022348
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004268
(v2.0)
Cdc42se1NM_001038708,NM_17239557912
34.734424.771536.001317.623113.626.796421.086442.129811.522123.4633
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004379
(v1.0)
Cdc42se157912
Minor ZGA0.98722
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004268
(v2.0)
Cdc42se157912
967/4730.5179591/4730.20471752/4735.45444368/4734.53119/473-2.5186212/473-1.7499
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004268
(v2.0)
Cdc42se157912
489/1641.0588268/1640.5894973/1646.06832133/1645.011110/164-1.876595/164-1.373
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004268
(v2.0)
Cdc42se157912
88.494615557.09
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004268
(v2.0)
Cdc42se157912
20.59858324.82
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
44.117543.578123.129616.192521.5042
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
151.582101.33263.782735.635875.5506
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
46.128918.837547.5447
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
45.026343.140664.8791
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
73.5587111.159
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
46.155718.579571.1572
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
21.414415.634514.1398
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
174.719238.792
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
11.80272.26552
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004379
(v1.0)
Cdc42se1NM_001038708,NM_17239557912
23.812419.3074
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004379
(v1.0)
12966H3155H12-3Mm.28189Spec1-pending57912
U003562NAP097844-001Spec1;TC824868U,F,23.33973.28382.97992.91052.44282.55572.4884
0004379
(v1.0)
22344L0958F05-3Mm.28189Spec1-pending57912
U003562NAP097844-001Spec1;TC824868U,F,23.60393.50723.23233.43783.37113.40153.3388
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004379
(v1.0)
1428131_a_atMm.28189Cdc42se1NM_172395.2,NM_001038708.257912
150.05228.675150.225129.6179.975
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004379
(v1.0)
A_51_P512591Cdc42se1NM_17239557912
11P1.3140.224P
0004379
(v1.0)
A_52_P340700Cdc42se1NM_17239557912
11P1.2960.236P
Proteome N/A