DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004385
GeneCdc73
SynonymsHrpt2
Desc.cell division cycle 73, Paf1/RNA polymerase II complex component
LocusNM_145991 chr1:145454629-145549814(-)
DB links


Entrez 214498
MGI 2384876
Ensembl ENSMUSG00000026361
Vega OTTMUSG00000030974
Featureprotein-coding
GO(BP)
  •   21 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-dependent (GO:0006351)
      mRNA polyadenylation (GO:0006378)
      cell cycle (GO:0007049)
      negative regulation of cell proliferation (GO:0008285)
      histone monoubiquitination (GO:0010390)
      Wnt receptor signaling pathway (GO:0016055)
      stem cell maintenance (GO:0019827)
      positive regulation of Wnt receptor signaling pathway (GO:0030177)
      positive regulation of mRNA 3'-end processing (GO:0031442)
      protein destabilization (GO:0031648)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      histone H2B ubiquitination (GO:0033523)
      negative regulation of myeloid cell differentiation (GO:0045638)
      negative regulation of S phase of mitotic cell cycle (GO:0045749)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      negative regulation of fibroblast proliferation (GO:0048147)
      negative regulation of epithelial cell proliferation (GO:0050680)
      cellular response to lipopolysaccharide (GO:0071222)
      negative regulation of G1/S transition of mitotic cell cycle (GO:2000134)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004274
(v2.0)
Cdc73NM_145991214498
7.655428.0092314.461226.187330.52414.8317313.47559.5065523.64694.24335
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004385
(v1.0)
Cdc73214498
MGA0.92149
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004274
(v2.0)
Cdc73214498
605/3380.3262476/3380.3768460/3383.99791616/3383.5788162/3380.988704/3380.458
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004274
(v2.0)
Cdc73214498
310/1350.6825240/1350.7097400/1355.04751085/1354.312654/1350.7185196/135-0.061
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004274
(v2.0)
Cdc73214498
39.145112730.82
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004274
(v2.0)
Cdc73214498
12.52749513.19
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
8.323889.9595419.494721.15189.55597
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
132.15475.9181294.487211.872162.011
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
8.703382.7996710.8661
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
8.495369.859547.03164
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
218.698201.183
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
8.708442.761327.71206
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
18.049120.422916.3028
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
668.984630.56
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004385
(v1.0)
Cdc73NM_145991214498
4.958254.93912
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004385
(v1.0)
Cdc73NM_145991214498
3.890967.6159
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004385
(v1.0)
1427971_atMm.389191Cdc73NM_145991.1214498
292.525562.5380.35393.8530.5
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004385
(v1.0)
A_52_P440962Hrpt2NM_145991214498
11P0.5830.139P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004385
(v1.0)
Cdc73214498
110110