DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004475
GeneCds1
Synonymsphosphatidate cytidylyltransferase
Desc.CDP-diacylglycerol synthase 1
LocusNM_173370 chr5:102194149-102252871(+)
DB links


Entrez 74596
MGI 1921846
Ensembl ENSMUSG00000029330
Vega OTTMUSG00000029627
Featureprotein-coding
GO(BP)
  •   4 Terms
GO(MF)
  •   4 Terms
      phosphatidate cytidylyltransferase activity (GO:0004605)
      transferase activity (GO:0016740)
      transferase activity, transferring phosphorus-containing groups (GO:0016772)
      nucleotidyltransferase activity (GO:0016779)
GO(CC)
KEGG
  •   3 Terms
      Glycerophospholipid metabolism (mmu00564)
      Metabolic pathways (mmu01100)
      Phosphatidylinositol signaling system (mmu04070)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004364
(v2.0)
Cds1NM_17337074596
26.978865.170347.00847.220998.676972.621220.0048906345.02069.805333.74774
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004475
(v1.0)
Cds174596
Maternal RNA0.98925
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004364
(v2.0)
Cds174596
832/4430.3957520/4430.1148120/4431.6898377/4431.0942243/4431.18391679/4431.3209
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004364
(v2.0)
Cds174596
443/1501.0446260/1500.6738102/1502.9465310/1502.3592109/1501.5708752/1501.7197
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004364
(v2.0)
Cds174596
81.809216150.81
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004364
(v2.0)
Cds174596
26.199610325.44
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004475
(v1.0)
Cds1NM_17337074596
67.756132.59075.38656.006870.0037479
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004475
(v1.0)
Cds1NM_17337074596
326.436130.5628.8611215.63030.0174705
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004475
(v1.0)
Cds1NM_17337074596
70.84529.8664235.5572
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004475
(v1.0)
Cds1NM_17337074596
69.151932.263533.3958
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004475
(v1.0)
Cds1NM_17337074596
61.6336252.446
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004475
(v1.0)
Cds1NM_17337074596
70.88649.7312936.6273
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004475
(v1.0)
Cds1NM_17337074596
4.987065.799886.8018
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004475
(v1.0)
Cds1NM_17337074596
13.513133.9641
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004475
(v1.0)
Cds1NM_17337074596
35.45495.05085
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004475
(v1.0)
Cds1NM_17337074596
17.583519.1339
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004475
(v1.0)
15666K0221F01-3Mm.467644833409J18Rik74596
3.40432.74412.54712.64053.27722.87343.0914
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004475
(v1.0)
1428680_atMm.46764Cds1NM_173370.374596
722.95696.6249.02500
0004475
(v1.0)
1456114_atMm.46764Cds1NM_173370.374596
593.950000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004475
(v1.0)
A_51_P479696Cds1NM_17337074596
11P0.6440.174P
0004475
(v1.0)
A_52_P327402Cds1NM_17337074596
11P1.3870.222P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004475
(v1.0)
Cds174596
220230