DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004479
GeneCdv3
SynonymsTPP36
Desc.carnitine deficiency-associated gene expressed in ventricle 3
LocusNM_175565 chr9:103255432-103268110(-)
NM_175833 chr9:103255432-103268110(-)
NM_001134427 chr9:103255432-103267309(-)
NM_001134426 chr9:103255432-103268110(-)
DB links


Entrez 321022
MGI 2448759
Ensembl ENSMUSG00000032803
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004368
(v2.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
147.204138.842232.354321.76267.99997.8917127.172211.484244.927123.626
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004479
(v1.0)
Cdv3321022
2-Cell Transient0.98945
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004368
(v2.0)
Cdv3321022
893/4770.3911658/4770.34731009/4774.64712947/4773.951434/477-1.7233276/477-1.3838
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004368
(v2.0)
Cdv3321022
473/1680.9763318/1680.8007776/1685.70992007/1684.889119/168-1.0479123/168-1.0401
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004368
(v2.0)
Cdv3321022
54.157415834.28
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004368
(v2.0)
Cdv3321022
17.552211814.87
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
144.372159.741239.462185.8489.3148
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
27.1325.563935.616835.527221.3385
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
150.95453.8337174.281
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
147.346158.137156.472
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
22.041635.4574
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
151.04253.0964171.613
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
221.705179.436168.761
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
63.130443.3705
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
113.235118.415
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004479
(v1.0)
Cdv3NM_001134426,NM_001134427,NM_175565,NM_175833321022
39.681240.9974
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004479
(v1.0)
1415704_a_atMm.485776Cdv3NM_175565.3,NM_001134426.1,NM_001134427.1,NM_175833.2321022
1129.451775.552029.41505.6251376.475
0004479
(v1.0)
1451100_a_atMm.485776Cdv3NM_175565.3,NM_001134426.1,NM_001134427.1,NM_175833.2321022
215.275138.425361.25279.825111.7
0004479
(v1.0)
1440332_atMm.485776Cdv3NM_175565.3,NM_001134426.1,NM_001134427.1,NM_175833.2321022
00314.375855.85506.45
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004479
(v1.0)
A_51_P232800Cdv3AK010956321022
11P0.6540.148P
0004479
(v1.0)
A_51_P343556Cdv3NM_175565321022
11P1.6140.134P
0004479
(v1.0)
A_52_P170711Cdv3NM_175833321022
11P0.6020.125P
0004479
(v1.0)
A_52_P339606Cdv3NM_175833321022
11P0.5490.118P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004479
(v1.0)
Cdv3321022
5.2543.759106.75