DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004615
GeneChaf1a
SynonymsCAF-1
Desc.chromatin assembly factor 1, subunit A (p150)
LocusNM_013733 chr17:56179839-56207449(+)
DB links


Entrez 27221
MGI 1351331
Ensembl ENSMUSG00000002835
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004527
(v2.0)
Chaf1aNM_01373327221
17.4399147.045117.83944.077932.729624.457415.0621166.68934.092324.605
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004615
(v1.0)
Chaf1a27221
Maternal RNA0.98312
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004527
(v2.0)
Chaf1a27221
657/4010.199456/4010.0691251/4012.8879719/4012.166742/401-1.1783376/401-0.69
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004527
(v2.0)
Chaf1a27221
261/1580.2101189/1580.141447/1581.7755201/1581.662926/158-0.5286206/158-0.2152
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004527
(v2.0)
Chaf1a27221
45.200720621.94
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004527
(v2.0)
Chaf1a27221
15.64669017.39
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004615
(v1.0)
Chaf1aNM_01373327221
152.87281.918932.788922.679610.7044
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004615
(v1.0)
Chaf1aFR163950,NM_01373327221
883.698451.51161.136148.94750.969
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004615
(v1.0)
Chaf1aNM_01373327221
159.8416.3779589.3754
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004615
(v1.0)
Chaf1aNM_01373327221
156.02181.0964123.986
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004615
(v1.0)
Chaf1aFR163950,NM_01373327221
476.915581.95
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004615
(v1.0)
Chaf1aNM_01373327221
159.9346.29059135.984
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004615
(v1.0)
Chaf1aNM_01373327221
30.357421.89823.7411
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004615
(v1.0)
Chaf1aFR163950,NM_01373327221
164.559174.078
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004615
(v1.0)
Chaf1aNM_01373327221
345.36611.9852
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004615
(v1.0)
Chaf1aNM_01373327221
1.281121.53078
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004615
(v1.0)
9873H3087E05-3Chaf1a27221
U018124NAP009187-001Chaf1a;TC915572Q9QWF0U,F,23.59763.7153.63014.08413.46143.58713.6665
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004615
(v1.0)
A_51_P196973Chaf1aNM_01373327221
11P0.01580.0326P
Proteome N/A