DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004715
GeneChsy1
Synonyms
Desc.chondroitin sulfate synthase 1
LocusNM_001081163 chr7:73254401-73318684(+)
DB links


Entrez 269941
MGI 2681120
Ensembl ENSMUSG00000032640
Vega OTTMUSG00000029829
Featureprotein-coding
GO(BP)
  •   2 Terms
      chondroitin sulfate biosynthetic process (GO:0030206)
      negative regulation of ossification (GO:0030279)
GO(MF)
  •   5 Terms
      transferase activity (GO:0016740)
      transferase activity, transferring hexosyl groups (GO:0016758)
      metal ion binding (GO:0046872)
      glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (GO:0047238)
      N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity (GO:0050510)
GO(CC)
KEGG
  •   2 Terms
      Glycosaminoglycan biosynthesis - chondroitin sulfate (mmu00532)
      Metabolic pathways (mmu01100)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004631
(v2.0)
Chsy1NM_001081163269941
3.18789146.242154.23934.2737.819125.2724911.8676192.75213.87655.44651
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004715
(v1.0)
Chsy1269941
Maternal RNA0.98335
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004631
(v2.0)
Chsy1269941
689/4580.0762391/458-0.3435167/4582.1165385/4581.0766110/458-0.0001779/4580.1666
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004631
(v2.0)
Chsy1269941
368/1600.6854181/1600.0613154/1603.4498349/1602.438132/160-0.2568301/1600.3106
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004631
(v2.0)
Chsy1269941
70.249617340.61
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004631
(v2.0)
Chsy1269941
18.7911915.79
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
151.991106.89425.52955.42478.43334
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
191.406154.31539.86019.7650810.7758
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
158.9211.16584116.623
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
155.123105.82142.832
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
117.658160.668
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
159.0131.14988156.653
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
23.63645.237779.70421
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
6.1739311.476
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004715
(v1.0)
Chsy1NM_001081163269941
149.18426.7924
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004715
(v1.0)
Chsy1NM_001081163269941
32.593944.5387
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004715
(v1.0)
1434316_atMm.333916Chsy1NM_001081163.1269941
4653.4256605.9752301.875110.625121.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004715
(v1.0)
A_52_P436364Chsy1AK129255269941
11P1.0320.807P
Proteome N/A