DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004774
GeneClcn5
SynonymsClC-5
Clc5
DXImx42e
Sfc13
Desc.chloride channel 5
LocusNM_016691 chrX:6735538-6765840(-)
NM_001243762 chrX:6735538-6896484(-)
DB links


Entrez 12728
MGI 99486
Ensembl ENSMUSG00000004317
Vega OTTMUSG00000016484
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004694
(v2.0)
Clcn5NM_001243762,NM_01669112728
28.987336.969456.255332.446315.69662.229918.764942.41920.2472.29909
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004774
(v1.0)
Clcn512728
Minor ZGA0.89016
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004694
(v2.0)
Clcn512728
368/2320.1521225/232-0.159711/232-0.7455116/2320.328136/232-0.6164248/232-0.5006
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004694
(v2.0)
Clcn512728
162/1070.084892/107-0.330611/1070.289681/1070.913819/107-0.4168131/107-0.3042
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004694
(v2.0)
Clcn512728
67.44278381.26
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004694
(v2.0)
Clcn512728
28.02924365.18
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
38.872637.779123.891410.657712.4106
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
127.254105.09286.242534.98525.0361
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
40.644910.248141.2178
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
39.673437.399731.6125
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
127.537138.916
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
40.668510.107734.6715
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
22.119710.290514.0554
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
19.025726.9297
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004774
(v1.0)
Clcn5NM_01669112728
34.55348.01322
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004774
(v1.0)
Clcn5NM_01669112728
0.8564220.577857
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004774
(v1.0)
10241H3093B07-3Mm.104172Clcn512728
U039222NAP078268-1Clcn5;TC932787,TC894145Q9WVD4U,F,22.52812.64472.77722.69462.70362.60842.5391
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004774
(v1.0)
1450787_atMm.254370Clcn5NM_016691.312728
322.8220.475167.7500
0004774
(v1.0)
1429400_atMm.254370Clcn5NM_016691.312728
178.225262.775157.3189.25325
0004774
(v1.0)
1420295_x_atMm.254370Clcn5NM_016691.312728
0000499.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004774
(v1.0)
A_52_P151974Clcn5AK01728512728
11P1.7260.115P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004774
(v1.0)
Clcn512728
120120