DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004850
GeneClk3
Synonyms
Desc.CDC-like kinase 3
LocusNM_007713 chr9:57598518-57613667(-)
DB links


Entrez 102414
MGI 1098670
Ensembl ENSMUSG00000032316
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004771
(v2.0)
Clk3NM_007713102414
17.541429.692339.413724.232317.463636.36715.962838.46713.478338.2119
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004850
(v1.0)
Clk3102414
Minor ZGA0.9461
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004771
(v2.0)
Clk3102414
974/5080.4256485/508-0.18271307/5084.93153124/5083.945117/508-2.7727280/508-1.4538
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004771
(v2.0)
Clk3102414
563/2030.9554269/2030.2886740/2035.38531587/2034.28127/203-2.6368124/203-1.3001
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004771
(v2.0)
Clk3102414
71.396417840.11
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004771
(v2.0)
Clk3102414
16.719612013.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004850
(v1.0)
Clk3NM_007713102414
30.866827.313718.039312.08711.4321
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004850
(v1.0)
Clk3NM_007713102414
429.892226.944160.496118.888140.656
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004850
(v1.0)
Clk3NM_007713102414
32.27416.4150829.7998
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004850
(v1.0)
Clk3NM_007713102414
31.502727.039428.5523
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004850
(v1.0)
Clk3NM_007713102414
851.935419.239
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004850
(v1.0)
Clk3NM_007713102414
32.29296.3272231.3152
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004850
(v1.0)
Clk3NM_007713102414
16.701611.67059.31858
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004850
(v1.0)
Clk3NM_007713102414
52.678647.1221
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004850
(v1.0)
Clk3NM_007713102414
24.11536.48509
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004850
(v1.0)
Clk3NM_007713102414
36.139923.81
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004850
(v1.0)
17818L0021A01-3Mm.25720AA517853102414
U010553NAP111024-1MGC36552;TC892959,TC8058372.78282.98432.86083.15572.95283.083.0255
0004850
(v1.0)
19630L0287A01-3Mm.23163Clk312749
U030928NAP056721-1Clk3;TC863547,TC863545,TC863542O35492U,F,23.13273.07953.10272.95312.67682.84472.6813
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004850
(v1.0)
1423849_a_atMm.25720Clk3NM_007713.4102414
217.85342.45190.225137.275175.825
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004850
(v1.0)
A_51_P169176Clk3NM_007713102414
11P1.1320.432P
0004850
(v1.0)
A_52_P559498Clk3NM_007713102414
11P1.1520.404P
Proteome N/A