DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004860
GeneClock
SynonymsbHLHe8
KAT13D
Desc.circadian locomotor output cycles kaput
LocusNM_007715 chr5:76641202-76733573(-)
DB links


Entrez 12753
MGI 99698
Ensembl ENSMUSG00000029238
Featureprotein-coding
GO(BP)
GO(MF)
  •   14 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity (GO:0000982)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
      RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription (GO:0001190)
      DNA binding (GO:0003677)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      histone acetyltransferase activity (GO:0004402)
      signal transducer activity (GO:0004871)
      protein binding (GO:0005515)
      transcription factor binding (GO:0008134)
      transferase activity (GO:0016740)
      transferase activity, transferring acyl groups (GO:0016746)
      protein dimerization activity (GO:0046983)
      E-box binding (GO:0070888)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004781
(v2.0)
ClockNM_001289826,NM_00771512753
3.9826926.45150.052634.893410.27425.3863515.565446.897412.11423.99878
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004860
(v1.0)
Clock12753
Minor ZGA0.91546
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004781
(v2.0)
Clock12753
756/3200.7257506/3200.5435163/3202.583309/3201.2742126/3200.7059664/3200.4525
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004781
(v2.0)
Clock12753
477/1301.3559273/1300.9489160/1303.7809288/1302.456221/130-0.5506184/130-0.0974
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004781
(v2.0)
Clock12753
42.954213232.54
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004781
(v2.0)
Clock12753
11.03799911.15
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004860
(v1.0)
ClockNM_00771512753
34.812943.844232.89149.1311613.5585
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004860
(v1.0)
ClockFR034009,FR146179,FR228530,NM_00771512753
86.0287114.06596.131651.544740.3367
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004860
(v1.0)
ClockNM_00771512753
36.40011.7948447.835
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004860
(v1.0)
ClockNM_00771512753
35.530143.40444.2868
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004860
(v1.0)
ClockFR034009,FR146179,FR228530,NM_00771512753
715.603630.673
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004860
(v1.0)
ClockNM_00771512753
36.42131.7702648.5722
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004860
(v1.0)
ClockNM_00771512753
30.45238.816510.6934
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004860
(v1.0)
ClockFR034009,FR146179,FR228530,NM_00771512753
264.527301.803
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004860
(v1.0)
ClockNM_00771512753
18.710320.8665
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004860
(v1.0)
ClockNM_00771512753
5.813866.92774
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004860
(v1.0)
5727H3006H10-3Mm.3552Clock12753
U026318NAP097778-001Clock;TC800730O087853.08773.1212.82122.58051.90232.15462.0558
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004860
(v1.0)
1418659_atMm.3552ClockNM_007715.512753
94.4127.6131.32536.928.7
0004860
(v1.0)
1439314_atMm.3552ClockNM_007715.512753
0000117.15
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004860
(v1.0)
A_52_P334670ClockNM_00771512753
11P0.6520.147P
0004860
(v1.0)
A_52_P334677ClockNM_00771512753
11P1.390.197P
Proteome N/A