DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0004877

Gene

Cltc

Synonyms

CHC

Description

clathrin, heavy polypeptide (Hc)

Locus

NM_001003908 UCSC: chr11:86508155-86570994(-) OLP: chr11:86508155-86570994(-)

DB links

Entrez 67300
MGI 2388633
Ensembl ENSMUSG00000047126
Vega OTTMUSG00000001209

Feature

protein-coding

GO_BP

8 Terms

GO_MF

5 Terms

GO_CC

14 Terms

KEGG

5 Terms

see DBTMEE:2004799 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0004877 (v1.0)	Cltc	NM_001003908	67300	101.046	72.6079	45.5429	45.5907	111.063

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0004877 (v1.0)	Cltc	NM_001003908	67300	105.653	26.8405	79.2168

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0004877 (v1.0)	Cltc	NM_001003908	67300	103.128	71.8789	52.1256

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0004877 (v1.0)	Cltc	NM_001003908	67300	105.714	26.4729	57.1696

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0004877 (v1.0)	Cltc	NM_001003908	67300	42.1657	44.0196	42.0055

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0004877 (v1.0)	Cltc	NM_001003908	67300	25.3043	34.6915

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0004877 (v1.0)	Cltc	NM_001003908	67300	3.10142	12.1201

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0004877 (v1.0)	3607	C0832C12-3	Mm.214732			U033227	NAP015416-001	Cltc;	TC813871		U,F,2	2.101	2.4168	2.5209	2.3472	2.157	2.5786	2.6651
0004877 (v1.0)	5986	H3014D01-3	Mm.200876	Cltc	67300	U033227	NAP004156-002	Cltc;	TC813868,TC813867		U,F,2	2.9402	3.0787	3.0887	2.8569	2.9588	2.9507	3.1539

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0004877 (v1.0)	1454626_at	Mm.479526	Cltc	NM_001003908.1	67300	681.025	766.425	567.775	418.8	1230.62
0004877 (v1.0)	1439094_at	Mm.479526	Cltc	NM_001003908.1	67300	0	0	0	0	228.275

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0004877 (v1.0)	A_52_P3835	Cltc	NM_001003908	67300	1	1	P	0.601	0.235	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0004877 (v1.0)	Cltc	67300	67	88	29	197	318	60