DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004929
GeneCnn3
SynonymsCalpo3
Desc.calponin 3, acidic
LocusNM_028044 chr3:121129459-121161123(+)
DB links


Entrez 71994
MGI 1919244
Ensembl ENSMUSG00000053931
Featureprotein-coding
GO(BP)
  •   2 Terms
      actomyosin structure organization (GO:0031032)
      negative regulation of ATPase activity (GO:0032780)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004855
(v2.0)
Cnn3NM_02804471994
23.2116164.808198.88393.040355.1622279.63187.4165179.70443.519288.826
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004929
(v1.0)
Cnn371994
Maternal RNA0.92373
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004855
(v2.0)
Cnn371994
784/4450.3036472/445-0.0311110/4451.559381/4451.1029156/4450.54131193/4450.822
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004855
(v2.0)
Cnn371994
471/2170.6029237/2170.0109104/2172.4753355/2172.028862/2170.2461569/2170.7886
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004855
(v2.0)
Cnn371994
63.265117137
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004855
(v2.0)
Cnn371994
16.140911613.91
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
171.308137.2769.282838.285362.0304
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
209.343170.58385.342878.683758.972
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
179.1188.48871149.765
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
174.837135.892133.03
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
943.613563.791
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
179.2228.37245145.902
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
64.14536.965930.2071
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
121.8749.498
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004929
(v1.0)
Cnn3NM_02804471994
106.49522.1093
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004929
(v1.0)
Cnn3NM_02804471994
221.542199.757
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004929
(v1.0)
7917H3056D03-3Mm.22171Cnn371994
U003794NAP093733-001TC862952,TC862933Q99JN5U,F,24.0013.90033.68613.56883.34363.643.727
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004929
(v1.0)
1426724_atMm.275555Cnn3NM_028044.271994
664.5751312.875867.05639.71763.625
0004929
(v1.0)
1455570_x_atMm.275555Cnn3NM_028044.271994
21313728.6987.1751494.52379.05
0004929
(v1.0)
1436759_x_atMm.275555Cnn3NM_028044.271994
1778.42938.875860.351472.752085.175
0004929
(v1.0)
1436836_x_atMm.275555Cnn3NM_028044.271994
2625.1254561.353019.753051.654301.975
0004929
(v1.0)
1438354_x_atMm.275555Cnn3NM_028044.271994
238.625443.77589.3213.975576
0004929
(v1.0)
1456380_x_atMm.275555Cnn3NM_028044.271994
2001.67534181388.352606.12221.15
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004929
(v1.0)
A_51_P271704Cnn3NM_02804471994
11P1.2270.289P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004929
(v1.0)
Cnn371994
422532