DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004934
GeneCnot1
Synonyms
Desc.CCR4-NOT transcription complex, subunit 1
LocusNM_001205226 chr8:98243351-98331362(-)
NM_178078 chr8:98243351-98331362(-)
NM_153164 chr8:98243351-98331362(-)
DB links


Entrez 234594
MGI 2442402
Ensembl ENSMUSG00000036550
Featureprotein-coding
GO(BP)
  •   2 Terms
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004860
(v2.0)
Cnot1NM_001205226,NM_153164,NM_178078234594
22.100928.69720.583670.856586.473242.910220.425619.216386.598628.1197
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004934
(v1.0)
Cnot1234594
Major ZGA0.97815
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004860
(v2.0)
Cnot1234594
750/4670.1703449/467-0.1725165/4672.0718430/4671.207816/467-2.7348226/467-1.6399
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004860
(v2.0)
Cnot1234594
428/2160.4719215/216-0.1223148/2162.9865369/2162.09114/216-3.402757/216-2.4902
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004860
(v2.0)
Cnot1234594
50.322115831.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004860
(v2.0)
Cnot1234594
13.370711811.33
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004934
(v1.0)
Cnot1NM_153164,NM_178078234594
29.551514.085952.232859.513614.1964
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004934
(v1.0)
Cnot1NM_153164,NM_178078234594
30.89888.0535515.368
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004934
(v1.0)
Cnot1NM_153164,NM_178078234594
30.160313.944414.1298
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004934
(v1.0)
Cnot1NM_153164,NM_178078234594
30.91677.9432415.4971
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004934
(v1.0)
Cnot1NM_153164,NM_178078234594
48.359457.462759.3097
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004934
(v1.0)
Cnot1NM_153164,NM_178078234594
68.123255.0156
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004934
(v1.0)
Cnot1NM_153164,NM_178078234594
1.152441.03658
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004934
(v1.0)
6517H3026E04-3Mm.226553MGC7843234594
U030138NAP028850-1MGC7843TC864019,TC8012882.9723.07413.47763.79393.12753.38673.1069
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004934
(v1.0)
1434251_atMm.259220Cnot1NM_153164.2,NM_178078.1234594
518.55238.05770.225822.4587.275
0004934
(v1.0)
1457546_atMm.259220Cnot1NM_153164.2,NM_178078.1234594
00195.7750195.925
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004934
(v1.0)
A_51_P218216Cnot1AK031357234594
11P1.0270.834P
0004934
(v1.0)
A_52_P22365Cnot1BC018281234594
11P1.5570.221P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004934
(v1.0)
Cnot1234594
911411174