DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0004936

Gene

Cnot2

Synonyms

Description

CCR4-NOT transcription complex, subunit 2

Locus

NM_001037847 UCSC: chr10:115922217-116018567(-) OLP: chr10:115922217-116018567(-)
NR_024327 UCSC: chr10:115922217-116018567(-) OLP: chr10:115922217-116018567(-)
NM_028082 UCSC: chr10:115922217-116018567(-) OLP: chr10:115922217-116018567(-)
NM_001037846 UCSC: chr10:115922217-116018567(-) OLP: chr10:115922217-116018567(-)
NM_001037848 UCSC: chr10:115946847-116018567(-) OLP: chr10:115946847-116018567(-)

DB links

Entrez 72068
MGI 1919318
Ensembl ENSMUSG00000020166
Vega OTTMUSG00000035217

Feature

protein-coding

GO_BP

2 Terms

GO_MF

GO_CC

2 Terms

KEGG

1 Terms

see DBTMEE:2004863 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0004936 (v1.0)	Cnot2	NM_001037846,NM_001037847,NM_001037848,NM_028082	72068	68.0273	81.0462	36.8766	44.7068	15.8092

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0004936 (v1.0)	Cnot2	NM_001037846,NM_001037847,NM_001037848,NM_028082	72068	71.1288	4.76631	88.4232

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0004936 (v1.0)	Cnot2	NM_001037846,NM_001037847,NM_001037848,NM_028082	72068	69.4287	80.2324	71.6734

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0004936 (v1.0)	Cnot2	NM_001037846,NM_001037847,NM_001037848,NM_028082	72068	71.1701	4.70102	78.6089

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0004936 (v1.0)	Cnot2	NM_001037846,NM_001037847,NM_001037848,NM_028082	72068	34.142	43.1662	35.2984

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0004936 (v1.0)	Cnot2	NM_001037846,NM_001037847,NM_001037848,NM_028082	72068	81.3246	29.0388

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0004936 (v1.0)	Cnot2	NM_001037846,NM_001037847,NM_001037848,NM_028082	72068	17.4393	23.9447

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0004936 (v1.0)	7226	H3044F02-3		Cnot2	72068	U032242	NAP093715-001	Cnot2;	TC891845,TC891837	Q9D0P1	U,F,2	3.6556	3.5803	3.7389	3.5766	4.2337	3.9321	4.1797
0004936 (v1.0)	8088	H3059F07-3	Mm.22533	Cnot2	72068	U032242	NAP037560-1	Cnot2;	TC891846	Q9D0P1	U,F,2	2.7903	2.6657	2.6458	2.5437	2.9027	2.7031	2.7278
0004936 (v1.0)	9081	H3076C02-3	Mm.22533	Cnot2	72068	U032242	NAP107838-1	Cnot2;	TC891841	Q9D0P1	U,F,2	3.9811	4.3087	4.6242	4.3408	3.8531	4.2272	3.9621

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0004936 (v1.0)	1454603_a_at	Mm.351553	Cnot2	NM_001037846.3,NM_001037847.2,NM_028082.2,NM_001037848.3	72068	346.2	388.275	420.075	0	233.45
0004936 (v1.0)	1436980_x_at	Mm.351553	Cnot2	NM_001037846.3,NM_001037847.2,NM_028082.2,NM_001037848.3	72068	954.05	722.975	728.65	620	682.35
0004936 (v1.0)	1456576_x_at	Mm.351553	Cnot2	NM_001037846.3,NM_001037847.2,NM_028082.2,NM_001037848.3	72068	808.95	493.9	655.4	446.15	388.275
0004936 (v1.0)	1445017_at	Mm.351553	Cnot2	NM_001037846.3,NM_001037847.2,NM_028082.2,NM_001037848.3	72068	97.9	0	116.9	0	125.35

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0004936 (v1.0)	A_51_P201520	Cnot2	BC063105	72068	1	1	P	0.742	0.207	P
0004936 (v1.0)	A_52_P12604	Cnot2	NM_028082	72068	1	1	P	0.351	0.0892	P
0004936 (v1.0)	A_52_P569038	Cnot2	BC063105	72068	1	1	P	0.669	0.155	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0004936 (v1.0)	Cnot2	72068	2	1	1	3	1	1