DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004937
GeneCnot3
Synonyms
Desc.CCR4-NOT transcription complex, subunit 3
LocusNM_146176 chr7:3596871-3612711(+)
DB links


Entrez 232791
MGI 2385261
Ensembl ENSMUSG00000035632
Vega OTTMUSG00000027888
Featureprotein-coding
GO(BP)
  •   2 Terms
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004864
(v2.0)
Cnot3NM_146176,NR_039587232791
13.6188101.4472.868215.574511.207235.14674.27278127.21712.941136.2128
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004937
(v1.0)
Cnot3232791
Maternal RNA0.98008
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004864
(v2.0)
Cnot3232791
855/5340.166605/5340.06381013/5344.49382242/5343.39534/534-1.8848290/534-1.4753
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004864
(v2.0)
Cnot3232791
452/2160.5504319/2160.4446811/2165.43271676/2164.271415/216-1.724691/216-1.8293
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004864
(v2.0)
Cnot3232791
47.875416029.92
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004864
(v2.0)
Cnot3232791
9.28871187.87
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004937
(v1.0)
Cnot3NM_146176232791
105.5350.645111.60527.767542.88413
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004937
(v1.0)
Cnot3FR077617,FR272922,FR283456,NM_146176232791
536.274262.32255.88878.108139.4857
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004937
(v1.0)
Cnot3NM_146176232791
110.3424.9805355.255
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004937
(v1.0)
Cnot3NM_146176232791
107.70550.136694.2955
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004937
(v1.0)
Cnot3FR077617,FR272922,FR283456,NM_146176232791
250.788584.444
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004937
(v1.0)
Cnot3NM_146176232791
110.4064.91231103.42
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004937
(v1.0)
Cnot3NM_146176232791
10.74467.499879.00153
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004937
(v1.0)
Cnot3FR077617,FR272922,FR283456,NM_146176232791
57.9415114.165
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004937
(v1.0)
Cnot3NM_146176232791
371.5328.2989
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004937
(v1.0)
Cnot3NM_146176232791
43.389643.4565
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004937
(v1.0)
1435965_atMm.358731Cnot3NM_146176.3232791
236.3301000
0004937
(v1.0)
1441465_atMm.358731Cnot3NM_146176.3232791
326.22500476.375519.575
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004937
(v1.0)
A_52_P214455Cnot3NM_146176232791
11P1.1450.45P
0004937
(v1.0)
A_52_P487127Cnot3NM_146176232791
11P0.4390.0885P
0004937
(v1.0)
A_52_P631098Cnot3NM_146176232791
11P1.4040.182P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004937
(v1.0)
Cnot3232791
1.5211.531