DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004938
GeneCnot4
SynonymsNot4
Not4h
Not4hp
Desc.CCR4-NOT transcription complex, subunit 4
LocusNM_001164413 chr6:34972065-35083737(-)
NM_001164412 chr6:34972065-35083737(-)
NM_001164414 chr6:34972065-35083737(-)
NM_001164411 chr6:34992707-35083737(-)
NM_016877 chr6:34992707-35083737(-)
DB links


Entrez 53621
MGI 1859026
Ensembl ENSMUSG00000038784
Featureprotein-coding
GO(BP)
  •   3 Terms
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004865
(v2.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
10.042938.899963.626413.40219.510187.4131211.145873.814511.00797.3322
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004938
(v1.0)
Cnot453621
Minor ZGA0.99711
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004865
(v2.0)
Cnot453621
588/3650.1747464/3650.2294167/3652.4344382/3651.390815/365-2.4703239/365-1.2051
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004865
(v2.0)
Cnot453621
277/1430.4384196/1430.3365157/1433.6275365/1432.66193/143-3.143549/143-2.1106
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004865
(v2.0)
Cnot453621
33.733612427.2
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004865
(v2.0)
Cnot453621
12.530210112.41
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
40.408643.72729.965376.580297.80026
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
57.257856.960412.139315.151211.7447
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
42.25093.6728647.7074
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
41.241143.288254.6229
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
137.511202.622
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
42.27553.6225559.9085
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
9.226386.353537.61263
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
14.987115.1246
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
127.67241.2593
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004938
(v1.0)
Cnot4NM_001164411,NM_001164412,NM_001164413,NM_001164414,NM_01687753621
4.998569.01765
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004938
(v1.0)
4389C0932B12-3Mm.42183Cnot453621
U027158NAP000732-001Cnot4;TC842772Q9Z1D0U,F,22.79713.04692.98862.98382.9682.97872.8924
0004938
(v1.0)
15684K0225E03-3Mm.42183Cnot453621
U027158NAP000732-002Cnot4;TC842773,TC842771Q9Z1D0U,F,23.37183.09073.09032.97643.71523.28083.4691
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004938
(v1.0)
1420999_atMm.214525Cnot4NM_016877.4,NM_001164411.1,NM_001164413.1,NM_001164414.1,NM_001164412.153621
194.975263.1129.357.656.35
0004938
(v1.0)
1436645_a_atMm.214525Cnot4NM_016877.4,NM_001164411.1,NM_001164413.1,NM_001164414.1,NM_001164412.153621
329.575310.125297.893.967.175
0004938
(v1.0)
1437586_atMm.214525Cnot4NM_016877.4,NM_001164411.1,NM_001164413.1,NM_001164414.1,NM_001164412.153621
199.825175.6148.77500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004938
(v1.0)
A_51_P182055Cnot4NM_01687753621
11P0.6070.169P
0004938
(v1.0)
A_52_P139Cnot4NM_01687753621
11P0.2910.0543P
0004938
(v1.0)
A_52_P681Cnot4NM_01687753621
11P0.3850.0664P
Proteome N/A