DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004940
GeneCnot6l
Synonyms
Desc.CCR4-NOT transcription complex, subunit 6-like
LocusNM_178854 chr5:96504757-96590774(-)
NM_144910 chr5:96505816-96591009(-)
DB links


Entrez 231464
MGI 2443154
Ensembl ENSMUSG00000034724
Vega OTTMUSG00000026588
Featureprotein-coding
GO(BP)
  •   4 Terms
      nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:0000288)
      mRNA processing (GO:0006397)
      positive regulation of cell proliferation (GO:0008284)
      mRNA destabilization (GO:0061157)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004867
(v2.0)
Cnot6lNM_001285511,NM_001285514,NM_144910,NM_178854231464
7.5505585.1423112.36122.82566.700062.889297.221377.61428.977672.21109
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004940
(v1.0)
Cnot6l231464
Maternal RNA0.97755
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004867
(v2.0)
Cnot6l231464
718/3480.5308459/3480.2825235/3482.9913729/3482.389714/348-2.4954149/348-1.8127
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004867
(v2.0)
Cnot6l231464
455/1471.112246/1470.6232228/1474.1262675/1473.5083/147-3.182268/147-1.6896
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004867
(v2.0)
Cnot6l231464
34.765814923.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004867
(v2.0)
Cnot6l231464
8.96591187.6
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004940
(v1.0)
Cnot6lNM_144910,NM_178854231464
246.654210.77341.626911.77027.87658
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004940
(v1.0)
Cnot6lFR006473,FR034460,FR122845,FR184048,FR216205,NM_144910,NM_178854231464
456.751334.97573.279821.582820.5883
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004940
(v1.0)
Cnot6lNM_144910,NM_178854231464
257.94.20409229.958
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004940
(v1.0)
Cnot6lNM_144910,NM_178854231464
251.736208.656189.639
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004940
(v1.0)
Cnot6lFR006473,FR034460,FR122845,FR184048,FR216205,NM_144910,NM_178854231464
340.282289.474
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004940
(v1.0)
Cnot6lNM_144910,NM_178854231464
258.0494.14651207.99
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004940
(v1.0)
Cnot6lNM_144910,NM_178854231464
38.5411.364617.6019
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004940
(v1.0)
Cnot6lFR006473,FR034460,FR122845,FR184048,FR216205,NM_144910,NM_178854231464
21.3531.2003
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004940
(v1.0)
Cnot6lNM_144910,NM_178854231464
188.67857.1282
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004940
(v1.0)
Cnot6lNM_144910,NM_178854231464
119.815183.675
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004940
(v1.0)
1552C0226H08-3Mm.28374MGC29037231464
U026422NAP095180-001MGC29037;TC869097U,F,22.96083.30382.6032.34582.34442.31652.2848
0004940
(v1.0)
4452C0934H11-3Mm.28374MGC29037231464
2.85712.83112.6232.37132.6812.50222.6946
0004940
(v1.0)
14091J0408A02-3Mm.28374MGC29037231464
U026422NAP095179-001MGC29037;TC869097U,F,24.31424.17553.55863.30313.30343.1283.2077
0004940
(v1.0)
17325K0606G09-3Mm.28374MGC29037231464
U026422NAP095180-001MGC29037;TC869097U,F,23.34473.10072.48212.31462.24412.14562.2475
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004940
(v1.0)
1451723_atMm.384746Cnot6l231464
428.45623.475618.775030.5
0004940
(v1.0)
1434311_atMm.384746Cnot6l231464
79.1578.32550.1036.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004940
(v1.0)
A_51_P208031Cnot6lNM_178854231464
11P0.3960.0814P
0004940
(v1.0)
A_52_P436464Cnot6lNM_144910231464
11P0.6420.141P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004940
(v1.0)
Cnot6l231464
020030