DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005013
GeneCol4a3bp
Synonymsceramide transport protein
Cert
GPBP
Desc.collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
LocusNM_001164222 chr13:97312690-97410122(+)
NM_023420 chr13:97312690-97410122(+)
DB links


Entrez 68018
MGI 1915268
Ensembl ENSMUSG00000021669
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004943
(v2.0)
Col4a3bpNM_001164222,NM_02342068018
19.694932.598662.864753.192716.06736.233368.6770144.162918.36196.57603
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005013
(v1.0)
Col4a3bp68018
Minor ZGA0.9617
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004943
(v2.0)
Col4a3bp68018
781/3820.5178555/3820.4218379/3823.5484948/3822.634623/382-1.9503175/382-1.7169
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004943
(v2.0)
Col4a3bp68018
419/1371.0944279/1370.905374/1374.9313896/1374.0169/137-1.761574/137-1.4692
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004943
(v2.0)
Col4a3bp68018
38.266611832.43
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004943
(v2.0)
Col4a3bp68018
6.0188847.17
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
33.871443.278939.575411.13186.05292
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
488.161775.155800.642253.3546.5084
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
35.41577.2026247.2182
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
34.569242.844432.7412
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
587.617167.279
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
35.43637.1039735.9095
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
36.640610.748212.6982
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
113.353113.324
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
39.893343.6425
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005013
(v1.0)
Col4a3bpNM_001164222,NM_02342068018
15.614715.8796
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005013
(v1.0)
9991H3089B01-3Col4a3bp68018
U015143NAP000550-002Col4a3bp;TC921549,TC887219Q9EQG8U,F,23.06353.17093.18593.20222.81462.87592.8075
0005013
(v1.0)
10023H3089G05-39230101K08Rik77681
U015143NAP092516-001Col4a3bp;TC887219Q9EQG8U,F,23.28473.15472.9572.91323.58143.15533.3913
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005013
(v1.0)
1452867_atMm.24125Col4a3bpNM_023420.2,NM_001164222.168018
3343.6256242.43670.71124.13535.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005013
(v1.0)
A_51_P134574Col4a3bpAK03030568018
11P0.8660.391P
0005013
(v1.0)
A_51_P238533Col4a3bpAK02030168018
11P0.7350.199P
Proteome N/A