DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005039
GeneCommd3
SynonymsBup
D2Ertd542e
Desc.COMM domain containing 3
LocusNM_147778 chr2:18594089-18597843(+)
DB links


Entrez 12238
MGI 88218
Ensembl ENSMUSG00000051154
Vega OTTMUSG00000011428
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004970
(v2.0)
Commd3NM_14777812238
74.537560.694684.803613.682640.299680.78846.735562.12324.3025102.148
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005039
(v1.0)
Commd312238
Maternal RNA0.8549
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004970
(v2.0)
Commd312238
792/3380.714610/3380.7339591/3384.35881774/3383.7133244/3381.5759950/3380.8896
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004970
(v2.0)
Commd312238
428/1500.995299/1500.8746395/1504.88941015/1504.067178/1501.0933349/1500.6156
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004970
(v2.0)
Commd312238
31.928813823.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004970
(v2.0)
Commd312238
11.86167416.03
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005039
(v1.0)
Commd3NM_14777812238
63.067758.245710.190127.952632.8865
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005039
(v1.0)
Commd3NM_14777812238
204.197160.59124.080683.521104.399
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005039
(v1.0)
Commd3NM_14777812238
65.943127.259163.5473
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005039
(v1.0)
Commd3NM_14777812238
64.36757.660845.8602
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005039
(v1.0)
Commd3NM_14777812238
75.065353.8077
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005039
(v1.0)
Commd3NM_14777812238
65.981426.885850.298
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005039
(v1.0)
Commd3NM_14777812238
9.4344526.989316.7633
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005039
(v1.0)
Commd3NM_14777812238
31.32819.251
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005039
(v1.0)
Commd3NM_14777812238
57.531814.8739
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005039
(v1.0)
Commd3NM_14777812238
216.772148.945
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005039
(v1.0)
8338H3063H12-3Bup12238
U042262NAP010263-001Bmi1;Bup;bmi-1;TC798959,TC798944P25916U,F,23.90614.06993.30913.1523.59813.4273.7229
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005039
(v1.0)
1454642_a_atMm.249586Commd3NM_147778.312238
298.525393.1500217.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005039
(v1.0)
A_51_P413785Commd3NM_14777812238
11P1.0120.923P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005039
(v1.0)
Commd312238
110110