DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005060
GeneCops7a
SynonymsCOP9 complex S7a
D6Ertd35e
Desc.COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
LocusNM_001164089 chr6:124908429-124915547(-)
NM_012003 chr6:124908825-124915415(-)
DB links


Entrez 26894
MGI 1349400
Ensembl ENSMUSG00000030127
Vega OTTMUSG00000023393
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004992
(v2.0)
Cops7aNM_001164089,NM_01200326894
43.072369.695171.381687.195382.503887.403860.864286.859758.411697.7401
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005060
(v1.0)
Cops7a26894
2-Cell Transient0.9689
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004992
(v2.0)
Cops7a26894
728/4940.0465473/494-0.1785145/4941.8075328/4940.737562/494-0.9254419/494-0.8346
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004992
(v2.0)
Cops7a26894
353/1780.4727201/1780.0588135/1783.1177283/1781.9856/178-2.643952/178-2.3413
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004992
(v2.0)
Cops7a26894
87.860915357.43
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004992
(v2.0)
Cops7a26894
24.49188728.15
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005060
(v1.0)
Cops7aNM_001164089,NM_01200326894
72.37949.519564.957257.06643.38
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005060
(v1.0)
Cops7aFR031347,NM_001164089,NM_01200326894
156.83696.140992.8576108.08792.7134
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005060
(v1.0)
Cops7aNM_001164089,NM_01200326894
75.678915.751654.0268
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005060
(v1.0)
Cops7aNM_001164089,NM_01200326894
73.870149.022264.4046
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005060
(v1.0)
Cops7aFR031347,NM_001164089,NM_01200326894
766.476704.47
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005060
(v1.0)
Cops7aNM_001164089,NM_01200326894
75.722915.535870.6368
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005060
(v1.0)
Cops7aNM_001164089,NM_01200326894
60.140355.099540.4464
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005060
(v1.0)
Cops7aFR031347,NM_001164089,NM_01200326894
85.402760.3245
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005060
(v1.0)
Cops7aNM_001164089,NM_01200326894
12.572582.3502
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005060
(v1.0)
Cops7aNM_001164089,NM_01200326894
6.382095.11621
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005060
(v1.0)
17626L0002F05-3Mm.1444Cops7a26894
U027858NAP093737-001Cops7a;TC831547,TC831545O88546U,F,23.52533.53553.68514.27534.11564.29574.1516
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005060
(v1.0)
1423245_atMm.244536Cops7aNM_012003.2,NM_001164089.126894
232.525187.2254.65419.5367.075
0005060
(v1.0)
1429078_a_atMm.244536Cops7aNM_012003.2,NM_001164089.126894
133.2113.27590.35129.1122.95
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005060
(v1.0)
A_51_P108862Cops7aNM_01200326894
11P0.9170.543P
0005060
(v1.0)
A_52_P448040Cops7aNM_01200326894
11P0.4360.106P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005060
(v1.0)
Cops7a26894
6741097