DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005153
GeneCpsf6
SynonymsCFIM68
HPBRII-4
HPBRII-7
Desc.cleavage and polyadenylation specific factor 6
LocusNM_001013391 chr10:116781724-116814029(-)
DB links


Entrez 432508
MGI 1913948
Ensembl ENSMUSG00000055531
Vega OTTMUSG00000042016
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005087
(v2.0)
Cpsf6NM_001013391432508
6.899815.860156.6641131.385426.526722.389817.723110.43530.27818.3428
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005153
(v1.0)
Cpsf6432508
Major ZGA0.99619
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005087
(v2.0)
Cpsf6432508
561/2600.5948378/2600.4223268/2603.5844660/2602.663530/260-1.0333243/260-0.6935
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005087
(v2.0)
Cpsf6432508
366/1540.7324206/1540.3017263/1544.2693636/1543.35638/154-2.077688/154-1.3914
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005087
(v2.0)
Cpsf6432508
33.432920116.63
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005087
(v2.0)
Cpsf6432508
5.34131663.22
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
6.090224.6000523.346718.408112.516
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
80.903270.3933365.455253.10388.5928
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
6.367882.523335.01876
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
6.215684.553867.73959
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
70.8495127.486
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
6.371582.488778.48852
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
21.615417.773820.9016
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
56.699268.0164
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005153
(v1.0)
Cpsf6NM_001013391432508
1.34159.8857
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005153
(v1.0)
Cpsf6NM_001013391432508
4.28293.53236
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005153
(v1.0)
1437372_atMm.479892Cpsf6NM_001013391.2432508
0085.7151.250
0005153
(v1.0)
1428231_atMm.479892Cpsf6NM_001013391.2432508
000374.175512.325
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005153
(v1.0)
A_51_P463109Cpsf6AK077833432508
11P0.7150.27P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005153
(v1.0)
Cpsf6432508
110110